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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS12035 [old locus tag: SA2094 ]
  • pan locus tag?: SAUPAN005769000
  • symbol: SA_RS12035
  • pan gene symbol?: nhaC
  • synonym:
  • product: Na+/H+ antiporter NhaC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS12035 [old locus tag: SA2094 ]
  • symbol: SA_RS12035
  • product: Na+/H+ antiporter NhaC
  • replicon: chromosome
  • strand: -
  • coordinates: 2353833..2355233
  • length: 1401
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2353833..2355233) NCBI
  • BioCyc: SA_RS12035 BioCyc
  • MicrobesOnline: see SA2094

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGATGAAAAGAAAACCAACCTTTTTAGAATCAATTTCGACAATGATTGTAATGGTTATT
    GTTGTTGTAACAGGCTTTGTGTTTTTTGATATTCCAATTCAAGTATTATTAATTATTGCC
    TCAGCATATGCCACATGGATTGCAAAACGTGTAGGCTTAACATGGCAAGATTTAGAAAAA
    GGCATTGCAGAACGTTTAAATACTGCAATGCCTGCAATTTTAATTATACTAGCGGTAGGA
    ATTATAGTAGGCAGTTGGATGTTTTCTGGCACAGTGCCAGCCTTGATTTATTATGGCTTA
    GATTTATTGAATCCAAGCTATTTTTTAATATCAGCCTTTTTTATAAGTGCTGTTACATCT
    GTAGCAACTGGTACAGCATGGGGCTCTGCATCAACTGCAGGGATTGCACTTATTTCTATT
    GGTAATCAATTGGGGATTCCTCCAGGGATGGCAGCGGGTGCTATTATAGCAGGGGCTGTG
    TTTGGCGATAAAATGTCACCATTATCAGATACAACTAATTTAGCGGCACTTGTTACTAAA
    GTTAATATATTTAAACATATACATTCGATGATGTGGACGACGATACCTGCATCAATCATA
    GGTTTATTAGTATGGTTTATTGCTGGATTTCAATTTAAAGGGCATTCAAATGATAAACAG
    ATTCAAACTTTGTTATCAGAGCTTGCACAGATTTATCAAATTAACATATGGGTCTGGGTT
    CCCTTAATTGTGATCATTGTTTGTTTGCTATTTAAAATGGCTACAGTGCCAGCTATGGTA
    ATATCAAGCTTTTCTGCCATTATAGTGGGGACTTTTAATCATCATTTCAAAATGACAGAT
    GGTTTCAAAGCAACATTTAGTGGTTTTAACGACTCAATGATACATCAGTCTCATATTTCA
    TCCAGTGTGAAAAGCTTGTTAGAACAGGGTGGTATGATGAGTATGACCCAAATATTAGTA
    ACGATATTTTGCGGATATGCATTTGCAGGTATTGTAGAAAAAGCAGGATGTTTAGAAGTC
    TTATTAACTACTATTTCTAAAGGCATCCATTCTGTAGGAAGTTTAATATGTATTACTGTT
    ATTTGTTGTATTGCGCTTGTATTCGCTGCAGGTGTTGCTTCGATTGTAATTATTATGGTC
    GGTGTGTTAATGAAAGATTTGTTCGAAAAATACCAAGTCTCTCGTTCCGTTTTATCAAGA
    ACACTTGAAGACTCAAGTACGATGGTCTTACCTTTAATACCATGGGGAACATCAGGTATT
    TACTATACGAATCAACTTCATGTCTCTGTTGGAGAATTTTTCATGTGGACAGTACCATGT
    TATTTATGCGCAATTATAGCAATTATCTATGGTTTTACAGGGATAGGTATTAAAAAGTCA
    TCGAATTCACGTTTAACTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1401

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS12035 [old locus tag: SA2094 ]
  • symbol: SA_RS12035
  • description: Na+/H+ antiporter NhaC
  • length: 466
  • theoretical pI: 8.54523
  • theoretical MW: 50354.8
  • GRAVY: 0.888197

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds Na+/H+ antiporter NhaC (TIGR00931; HMM-score: 434.8)
  • TheSEED: see SA2094
  • PFAM:
    IT (CL0182) Na_H_antiporter; Na+/H+ antiporter family (PF03553; HMM-score: 238.4)
    and 1 more
    no clan defined Vpu; Vpu protein (PF00558; HMM-score: 8.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.018641
    • TAT(Tat/SPI): 0.001218
    • LIPO(Sec/SPII): 0.004244
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MMKRKPTFLESISTMIVMVIVVVTGFVFFDIPIQVLLIIASAYATWIAKRVGLTWQDLEKGIAERLNTAMPAILIILAVGIIVGSWMFSGTVPALIYYGLDLLNPSYFLISAFFISAVTSVATGTAWGSASTAGIALISIGNQLGIPPGMAAGAIIAGAVFGDKMSPLSDTTNLAALVTKVNIFKHIHSMMWTTIPASIIGLLVWFIAGFQFKGHSNDKQIQTLLSELAQIYQINIWVWVPLIVIIVCLLFKMATVPAMVISSFSAIIVGTFNHHFKMTDGFKATFSGFNDSMIHQSHISSSVKSLLEQGGMMSMTQILVTIFCGYAFAGIVEKAGCLEVLLTTISKGIHSVGSLICITVICCIALVFAAGVASIVIIMVGVLMKDLFEKYQVSRSVLSRTLEDSSTMVLPLIPWGTSGIYYTNQLHVSVGEFFMWTVPCYLCAIIAIIYGFTGIGIKKSSNSRLT

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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