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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS02295 [old locus tag: SA0401 ]
- pan locus tag?: SAUPAN002143000
- symbol: SA_RS02295
- pan gene symbol?: —
- synonym:
- product: tandem-type lipoprotein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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781ATGGGATATTCAAAAAGGTTTGCATTGTACATAAGTATCTTGATTTTAATAGTTATGGTA
GCAGGTTGTGGTAAAAGTGATGAAACAAAAGAAGATTCCAAAGAAGAACAAATTAAAAAG
AGCTTTGCGAAAACGTTAGATATGTACCCTATTAAGAATCTCGAGGATTTATACGATAAA
GAAGGATACCGTGATGGCGAATTTAAAAAGGGTGATAAGGGGACGTGGGTTCTGTATTCA
GCTATAGTATCACAACCAAAAGGCGAGAGTTTAAAATCACGAGGAATGATATTAAAGTTA
GATAGAAATAAGAGAACTGCTAAAGGAAGTTATATTATTAGAGAATTGAAAGAAGATAAA
AATCATGATGTTCAAAAAAATGAAAAGAAATATCCAGTGAAATTGGTGAATAATAGGATA
GTTTTGGTAAAAGATGTTAAAGACAAAAAGTTAAAAAATGAAATAGAGTCGTTTGAATTA
TTTTCACAATATGGAAACTTTAATCATTTTGATCGGAATGAGATTACTAATATTTCATAT
AATCCTAATGCTCCCAATTACTCTGCAGAATATAAAATGAAGAAAAATGACAGAAACATT
CAACAGTTGAAAAAGAGATTTAATCTAAAAACTAGCAAGACACCAAAATTATTGTTTAAG
GGATCTGGAGATATAAAGGGGTCTTCTGTAGGATATAAGGAAATAGAAATCATATTTAGT
AGAAGTAAAGAAGAAGCATTTATTATGTTGACAGCGTTGAGTTCGTTCCAAGTAACAAAA
TGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS02295 [old locus tag: SA0401 ]
- symbol: SA_RS02295
- description: tandem-type lipoprotein
- length: 260
- theoretical pI: 10.1784
- theoretical MW: 30107.5
- GRAVY: -0.752692
⊟Function[edit | edit source]
- TIGRFAM: Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 418.5)
- TheSEED: see SA0401
- PFAM: LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 347.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 3.33
- Cellwall Score: 3.33
- Extracellular Score: 3.33
- Internal Helix: 1
- LocateP:
- SignalP: Signal peptide LIPO(Sec/SPII) length 22 aa
- SP(Sec/SPI): 0.000532
- TAT(Tat/SPI): 0.000055
- LIPO(Sec/SPII): 0.999215
- Cleavage Site: CS pos: 22-23. VAG-CG. Pr: 0.9997
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MGYSKRFALYISILILIVMVAGCGKSDETKEDSKEEQIKKSFAKTLDMYPIKNLEDLYDKEGYRDGEFKKGDKGTWVLYSAIVSQPKGESLKSRGMILKLDRNKRTAKGSYIIRELKEDKNHDVQKNEKKYPVKLVNNRIVLVKDVKDKKLKNEIESFELFSQYGNFNHFDRNEITNISYNPNAPNYSAEYKMKKNDRNIQQLKKRFNLKTSKTPKLLFKGSGDIKGSSVGYKEIEIIFSRSKEEAFIMLTALSSFQVTK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.