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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS13380 [old locus tag: SAUSA300_2417 ]
  • pan locus tag?: SAUPAN006037000
  • symbol: SAUSA300_RS13380
  • pan gene symbol?: —
  • synonym:
  • product: transporter

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS13380 [old locus tag: SAUSA300_2417 ]
  • symbol: SAUSA300_RS13380
  • product: transporter
  • replicon: chromosome
  • strand: +
  • coordinates: 2602984..2604522
  • length: 1539
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGACATCAAAACATCAACAAAAGGGGTCTATCGTCAATCGTTTCTTGAATAGTGTTGAA
    AAAATCGGAAATAAATTGCCAGATCCTAGCGTCTTATTCTTTTTAATGTGTGTGGGCTTA
    GCCATTATGACATGGGTTATCTCATTATTTAATGTATCTGTTAAGCATCCAGGTACGCAT
    CAAACCATTTATATTAAAAATATAATTAGCCATGATGGATTTACGATGATAATGAATGAT
    ACGATTAAAAATTTCTCAGAGTTCCCAGCATTAGGCTTAGTACTAGCAGTGATGATTGGT
    ATTGGTGTTGCAGAGAAAACAGGATACTTCGATAAGTTAATGATTTCTGTTGTGAATCGC
    GCACCACGCTTCTTAATTTTACCGACTATTATATTAATTGGTATTTTAGGTAGTACAGCC
    GGCGATGCTGCGACAATTATCTTGCCGCCGCTTGCAGCAATGCTTTTTATTAAAATTGGC
    TATCACCCTATCGCTGGACTAACGATGGCATATGCTTCCGCTGTTGGAGGATTTGCAGCA
    AATATAGTTGTTGGTATGCAAGATGCTTTGGTCTATTCATTTACAGAACCGGCAACACGT
    ATCGTTTCAGATTCTATTAAAACAAACGTTGCTATGAACTGGTACTTTATCGCAGCGAGT
    GTCGTTGTATTACTTCCTACGATATTGCTAGTTACAACTAAGCTCATTATTCCTAGATTA
    GGAAAATATGATGACAGTTTAATGCATGATGACCATGAAGAAACATCTTCACATATTACT
    GACAAAGAAGCACATGCTTTAAAATGGGCAAATATCAGTTTCATAGTCACAATTATTTTA
    TTAATTATTACAGCCATTCCTGAACATAGCTTTTTAAGAAATGCTAAAACAGGCAGCTTA
    CTAGACGATGCGCCATTAATTAACGGTGTCGGATTAATTATTCTTGTCGTATTTTTAGTA
    CCTGGATTAGTTTATGGGATTTTAAGCAAAGAAATTAAAAATACAAAAGACTTAGGTAAA
    ATGTTCGGCGATGCTGTAGGATCAATGGGAACATTTATCGTTATTGTGTTTTTTGCAGCA
    CAGCTACTTGCGTATTTAAAGTGGAGTAATTTAGGAATTATCGCTGCTGTTAAAGGTGCC
    AAATTATTAGAACATCAAAACGGTATTGTATTGATACTAGGTATTATTGTACTGAGTGCA
    ATGGTCAACATGTTAATCGGAAGCGCATCGGCTAAATGGGGTATTTTAGGACCGATATTC
    GTACCAATGTTAATCCTTATCGGCTTTCATCCCGCATTCACACAAGTCATTTACCGTGTA
    GGCGATTCAATTACCAATCCAATTACACCGATGATGCCGTACTTACCTTTATTATTAACT
    TATGCACAAAAATACGATAAACGCATGAAACTCGGAGCCTTACTTTCTAGTTTAATGCCG
    TATTCAATCGCGCTAAGTATTGTATGGACAGTATTTGTCATCATTTGGTTCCTATTAGGT
    ATCCCTGTTGGACCAGGTGGACCGATATTCGTTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1539

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS13380 [old locus tag: SAUSA300_2417 ]
  • symbol: SAUSA300_RS13380
  • description: transporter
  • length: 512
  • theoretical pI: 9.7071
  • theoretical MW: 55574.3
  • GRAVY: 0.775391

⊟Function[edit | edit source]

  • TIGRFAM:
    Hypothetical proteins Conserved AbgT transporter family (TIGR00819; HMM-score: 447.5)
  • TheSEED: see SAUSA300_2417
  • PFAM:
    IT (CL0182) ABG_transport; AbgT putative transporter family (PF03806; HMM-score: 726.3)
    and 2 more
    DcuC; C4-dicarboxylate anaerobic carrier (PF03606; HMM-score: 26.3)
    Na_H_antiporter; Na+/H+ antiporter family (PF03553; HMM-score: 25.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 11
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004399
    • TAT(Tat/SPI): 0.000242
    • LIPO(Sec/SPII): 0.001808
  • predicted transmembrane helices (TMHMM): 12

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTSKHQQKGSIVNRFLNSVEKIGNKLPDPSVLFFLMCVGLAIMTWVISLFNVSVKHPGTHQTIYIKNIISHDGFTMIMNDTIKNFSEFPALGLVLAVMIGIGVAEKTGYFDKLMISVVNRAPRFLILPTIILIGILGSTAGDAATIILPPLAAMLFIKIGYHPIAGLTMAYASAVGGFAANIVVGMQDALVYSFTEPATRIVSDSIKTNVAMNWYFIAASVVVLLPTILLVTTKLIIPRLGKYDDSLMHDDHEETSSHITDKEAHALKWANISFIVTIILLIITAIPEHSFLRNAKTGSLLDDAPLINGVGLIILVVFLVPGLVYGILSKEIKNTKDLGKMFGDAVGSMGTFIVIVFFAAQLLAYLKWSNLGIIAAVKGAKLLEHQNGIVLILGIIVLSAMVNMLIGSASAKWGILGPIFVPMLILIGFHPAFTQVIYRVGDSITNPITPMMPYLPLLLTYAQKYDKRMKLGALLSSLMPYSIALSIVWTVFVIIWFLLGIPVGPGGPIFVK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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