From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS12935 [old locus tag: SAUSA300_2343 ]
  • pan locus tag?: SAUPAN005928000
  • symbol: SAUSA300_RS12935
  • pan gene symbol?: narG
  • synonym:
  • product: nitrate reductase subunit alpha

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS12935 [old locus tag: SAUSA300_2343 ]
  • symbol: SAUSA300_RS12935
  • product: nitrate reductase subunit alpha
  • replicon: chromosome
  • strand: -
  • coordinates: 2516792..2520481
  • length: 3690
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    ATGGGAAAATTTGGATTGAATTTCTTTAAGCCAACAGAAAAATTTAATGGGAATTGGTCG
    ATCCTAGAAAGTAAAAGTAGAGAATGGGAAAAAATGTACAGAGAACGTTGGAGCCACGAT
    AAAGAAGTAAGAACAACACATGGTGTTAACTGTACAGGCTCATGTTCTTGGAAAGTATTT
    GTGAAAAATGGTGTGATTACCTGGGAAAATCAACAAACTGACTATCCAAGTTGTGGTCCG
    GATATGCCTGAATATGAACCGAGAGGATGTCCACGAGGTGCGTCATTCTCTTGGTATGAA
    TACAGTCCGCTTCGAATCAAATATCCATATATTCGTGGAAAACTCTGGGATTTATGGACT
    GAAGCATTAGAAGAAAACAATGGTAATCGCGTTGCTGCATGGGCGTCTATTGTTGAAAAT
    GAAGACAAAGCCAAACAATATAAGCAAGCCCGAGGTATGGGAGGGCACGTGCGTTCAAAT
    TGGAAAGACGTTACAGAGATAATCGCAGCACAATTACTGTATACAATAAAAAAATATGGT
    CCAGATCGAATCGCAGGATTTACACCTATTCCAGCGATGTCAATGATTAGTTATGCAGCA
    GGTGCTCGATTCATCAATTTGCTTGGTGGTGAAATGCTTAGTTTTTATGACTGGTATGCA
    GATTTACCACCTGCCTCTCCACAAATTTGGGGAGAGCAAACAGATGTGCCTGAATCAAGT
    GACTGGTATAACGCATCATACATTATTATGTGGGGCTCTAATGTACCTTTAACACGTACT
    CCGGATGCACATTTTATGACTGAAGTCCGCTATAAAGGTACAAAAGTCATTTCAGTAGCA
    CCAGATTACGCAGAAAATGTGAAATTTGCAGATAACTGGCTAGCACCGAATCCTGGTTCA
    GATGCTGCAATTGCACAAGCAATGACGCATGTTATTTTACAAGAACATTATGTTAATCAA
    CCTAATGAACGCTTTATAAATTACGCTAAACAATATACAGATATGCCGTTTCTTATCATG
    CTGGATGAAGATGAAAATGGATATAAAGCGGGTCGATTTTTAAGAGCGAGTGACTTAGGT
    CAAACAACAGAGCAAGGCGAATGGAAGCCAGTTATTCATGATGCAATCAGCGATAGTTTA
    GTAGTACCTAATGGCACAATGGGTCAACGTTGGGAAGAAGGTAAGAAGTGGAACTTAAAA
    CTAGAAACAGAAGATGGTTCTAAAATTAACCCTACATTATCAATGACAGAAGGTGGATAC
    GAATTAGAAACAATTCAATTCCCATACTTTGATAGTGATGGAGATGGGATATTCAATCGT
    CCAATTCCAACTCGACAAGTCACTTTAGCAAATGGTGACAAAGTCCGTATTGCTACAATT
    TTTGACTTAATGGCAAGTCAATATGGCGTGCGTCGTTTTGATCATAAATTAGAATCAAAA
    GGATACGACGATGCAGAATCAAAATATACACCTGCTTGGCAAGAAGCCATTTCAGGCGTA
    AAACAAAGTGTTGTCATTCAAGTAGCGAAAGAATTTGCGCAAAACGCTATCGATACTGAA
    GGGCGTTCAATGATTATCATGGGTGCGGGTATTAACCATTGGTTTAACTCAGATACGATT
    TATCGTTCAATCTTAAACTTAGTTATGTTATGTGGCTGTCAAGGTGTGAACGGTGGCGGT
    TGGGCTCACTATGTGGGACAAGAAAAATGTCGTCCGATTGAAGGATGGAGTACTGTCGCA
    TTTGCGAAAGACTGGCAAGGACCACCACGTTTGCAAAACGGAACAAGTTGGTTCTATTTT
    GCAACAGACCAATGGAAATATGAAGAGTCAAATGTAGATCGTTTAAAATCTCCATTAGCT
    AAAACAGAGGAGTTAAAGCATCAACATCCAGCTGATTATAATGTTTTAGCAGCTAGACTT
    GGTTGGTTACCATCATATCCACAATTTAATAAAAATAGTTTGTTGTTTGCAGAAGAAGCT
    AAAGATGAAGGTATAGATTCAAATGAAGCGATTTTGCAACGTGCAATTGATGAAGTGAAA
    TCAAAACAAACACAATTTGCAATAGAAGATCCTGATTTGAAAAAGAATCATCCAAAATCA
    TTATTTATATGGCGTTCAAACTTAATTTCAAGTTCTGCAAAAGGTCAAGAATACTTTATG
    AAGCATTTACTTGGCACAAAATCAGGGTTATTAGCTACACCAAATGAAGATGAAAAGCCA
    GAAGAAATTACGTGGCGTGAAGAAACAACAGGTAAGTTAGATTTAGTGGTCTCTTTAGAC
    TTCAGAATGACGGCAACACCGTTATATTCTGACATTGTTTTGCCGGCAGCGACTTGGTAT
    GAAAAACATGATTTATCATCAACGGATATGCATCCATATGTACATCCTTTCAATCCTGCC
    ATTGATCCGTTATGGGAATCGCGTTCAGACTGGGATATTTATAAAACGTTGGCAAAAGCA
    TTTTCAGAAATGGCAAAAGACTATTTACCTGGAACGTTTAAAGATGTTGTGACAACTCCA
    CTTAGTCATGATACAAAGCAAGAAATTTCAACACCATACGGCGTAGTGAAAGATTGGTCG
    AAGGGTGAAATTGAAGCGGTACCTGGACGTACAATGCCTAACTTTGCAATTGTAGAACGC
    GACTACACTAAAATTTACGACAAATATGTCACGCTTGGTCCTGTACTTGAAAAAGGGAAA
    GTTGGAGCACATGGTGTAAGTTTCGGTGTCAGTGAACAATATGAAGAATTAAAAAGTATG
    TTAGGTACGTGGAGTGATACAAATGATGATTCTGTGAGAGCGAATCGTCCACGTATTGAT
    ACAGCACGTAATGTAGCTGATGCAATACTAAGTATTTCATCTGCTACGAATGGTAAATTA
    TCACAAAAATCATATGAAGATCTCGAAGAACAAACTGGAATGCCGTTAAAAGATATTTCT
    AGCGAACGCGCTGCTGAGAAAATTTCGTTTTTAAATATAACTTCACAACCACGAGAAGTA
    ATACCGACAGCAGTATTCCCAGGTTCAAATAAACAAGGTCGACGATATTCACCATTTACA
    ACGAATATAGAACGTCTAGTACCTTTTAGAACATTAACAGGACGTCAAAGTTATTATGTG
    GATCACGAAGTTTTCCAACAATTTGGGGAGAGCTTACCAGTATATAAACCGACATTGCCG
    CCAATGGTATTTGGGAATAGAGATAAGAAAATTAAAGGTGGTACAGATGCTTTGGTACTG
    CGTTATTTAACGCCTCATGGAAAATGGAATATACACTCAATGTATCAAGATAATAAGCAT
    ATGTTGACACTATTTAGAGGTGGTCCAACGGTTTGGATATCAAATGAAGATGCTGAAAAA
    CACGATATCCAAGATAATGATTGGCTAGAAGTGTATAACCGTAATGGTGTTGTAACGGCA
    AGAGCAGTTATTTCGCATCGTATGCCTAAAGGTACAATGTTTATGTATCATGCACAAGAT
    AAACATATTCAAACGCCTGGGTCAGAAATTACAGATACACGTGGTGGTTCACACAACGCG
    CCGACTAGAATCCATTTGAAACCAACACAACTAGTCGGAGGATACGCACAAATTAGTTAT
    CACTTTAATTATTATGGACCAATTGGGAACCAAAGGGATTTATATGTAGCAGTTAGAAAG
    ATGAAGGAGGTTAATTGGCTTGAAGATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3120
    3180
    3240
    3300
    3360
    3420
    3480
    3540
    3600
    3660
    3690

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS12935 [old locus tag: SAUSA300_2343 ]
  • symbol: SAUSA300_RS12935
  • description: nitrate reductase subunit alpha
  • length: 1229
  • theoretical pI: 6.19853
  • theoretical MW: 139828
  • GRAVY: -0.592596

⊟Function[edit | edit source]

  • reaction:
    EC 1.7.99.4?  ExPASy
    Nitrate reductase Nitrite + acceptor = nitrate + reduced acceptor
  • TIGRFAM:
    Metabolism Energy metabolism Anaerobic nitrate reductase, alpha subunit (TIGR01580; EC 1.7.99.4; HMM-score: 1838.2)
    and 13 more
    DMSO reductase family type II enzyme, molybdopterin subunit (TIGR03479; HMM-score: 591.5)
    anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family (TIGR02166; HMM-score: 180.3)
    formate dehydrogenase, alpha subunit (TIGR01591; EC 1.2.1.2; HMM-score: 132.8)
    molybdopterin guanine dinucleotide-containing S/N-oxide reductases (TIGR00509; HMM-score: 102.5)
    trimethylamine-N-oxide reductase TorA (TIGR02164; EC 1.7.2.3; HMM-score: 78.6)
    Metabolism Energy metabolism Anaerobic formate dehydrogenase-N alpha subunit (TIGR01553; EC 1.1.5.6; HMM-score: 46.7)
    Metabolism Energy metabolism Electron transport formate dehydrogenase-N alpha subunit (TIGR01553; EC 1.1.5.6; HMM-score: 46.7)
    Metabolism Energy metabolism Electron transport arsenite oxidase, large subunit (TIGR02693; EC 1.20.9.1; HMM-score: 28.3)
    Metabolism Central intermediary metabolism Nitrogen metabolism periplasmic nitrate reductase, large subunit (TIGR01706; EC 1.7.99.4; HMM-score: 24.6)
    Metabolism Energy metabolism Electron transport periplasmic nitrate reductase, large subunit (TIGR01706; EC 1.7.99.4; HMM-score: 24.6)
    Metabolism Energy metabolism Aerobic periplasmic nitrate reductase, large subunit (TIGR01706; EC 1.7.99.4; HMM-score: 24.6)
    oxidoreductase alpha (molybdopterin) subunit (TIGR01701; HMM-score: 19.7)
    Metabolism Energy metabolism Electron transport NADH dehydrogenase (quinone), G subunit (TIGR01973; EC 1.6.99.5; HMM-score: 13.9)
  • TheSEED: see SAUSA300_2343
  • PFAM:
    no clan defined Molybdopterin; Molybdopterin oxidoreductase (PF00384; HMM-score: 539.6)
    and 3 more
    AcetylDC-like (CL0332) Molydop_binding; Molydopterin dinucleotide binding domain (PF01568; HMM-score: 75.9)
    4Fe-4S (CL0344) Nitr_red_alph_N; Respiratory nitrate reductase alpha N-terminal (PF14710; HMM-score: 38.9)
    Molybdop_Fe4S4; Molybdopterin oxidoreductase Fe4S4 domain (PF04879; HMM-score: 12.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Mo-bis(molybdopterin guanine dinucleotide), [4Fe-4S] cluster
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 9.99
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.069378
    • TAT(Tat/SPI): 0.00154
    • LIPO(Sec/SPII): 0.003017
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MGKFGLNFFKPTEKFNGNWSILESKSREWEKMYRERWSHDKEVRTTHGVNCTGSCSWKVFVKNGVITWENQQTDYPSCGPDMPEYEPRGCPRGASFSWYEYSPLRIKYPYIRGKLWDLWTEALEENNGNRVAAWASIVENEDKAKQYKQARGMGGHVRSNWKDVTEIIAAQLLYTIKKYGPDRIAGFTPIPAMSMISYAAGARFINLLGGEMLSFYDWYADLPPASPQIWGEQTDVPESSDWYNASYIIMWGSNVPLTRTPDAHFMTEVRYKGTKVISVAPDYAENVKFADNWLAPNPGSDAAIAQAMTHVILQEHYVNQPNERFINYAKQYTDMPFLIMLDEDENGYKAGRFLRASDLGQTTEQGEWKPVIHDAISDSLVVPNGTMGQRWEEGKKWNLKLETEDGSKINPTLSMTEGGYELETIQFPYFDSDGDGIFNRPIPTRQVTLANGDKVRIATIFDLMASQYGVRRFDHKLESKGYDDAESKYTPAWQEAISGVKQSVVIQVAKEFAQNAIDTEGRSMIIMGAGINHWFNSDTIYRSILNLVMLCGCQGVNGGGWAHYVGQEKCRPIEGWSTVAFAKDWQGPPRLQNGTSWFYFATDQWKYEESNVDRLKSPLAKTEELKHQHPADYNVLAARLGWLPSYPQFNKNSLLFAEEAKDEGIDSNEAILQRAIDEVKSKQTQFAIEDPDLKKNHPKSLFIWRSNLISSSAKGQEYFMKHLLGTKSGLLATPNEDEKPEEITWREETTGKLDLVVSLDFRMTATPLYSDIVLPAATWYEKHDLSSTDMHPYVHPFNPAIDPLWESRSDWDIYKTLAKAFSEMAKDYLPGTFKDVVTTPLSHDTKQEISTPYGVVKDWSKGEIEAVPGRTMPNFAIVERDYTKIYDKYVTLGPVLEKGKVGAHGVSFGVSEQYEELKSMLGTWSDTNDDSVRANRPRIDTARNVADAILSISSATNGKLSQKSYEDLEEQTGMPLKDISSERAAEKISFLNITSQPREVIPTAVFPGSNKQGRRYSPFTTNIERLVPFRTLTGRQSYYVDHEVFQQFGESLPVYKPTLPPMVFGNRDKKIKGGTDALVLRYLTPHGKWNIHSMYQDNKHMLTLFRGGPTVWISNEDAEKHDIQDNDWLEVYNRNGVVTARAVISHRMPKGTMFMYHAQDKHIQTPGSEITDTRGGSHNAPTRIHLKPTQLVGGYAQISYHFNYYGPIGNQRDLYVAVRKMKEVNWLED

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SAUSA300_RS12935&oldid=78610"