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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS12895 [old locus tag: SAUSA300_2334 ]
  • pan locus tag?: SAUPAN005918000
  • symbol: SAUSA300_RS12895
  • pan gene symbol?: —
  • synonym:
  • product: peptidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS12895 [old locus tag: SAUSA300_2334 ]
  • symbol: SAUSA300_RS12895
  • product: peptidase
  • replicon: chromosome
  • strand: +
  • coordinates: 2509908..2510546
  • length: 639
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGTATAAAATCAATATTATTAGATCAGATTCCGTCTATAATAATATACTCAAGGCACCA
    ATAAACGACCGTGATTCAATTTTCACTAAAGAAATATTAGTACCTTTTAAAAAGAAATTT
    GAGGTACAACATATGCCTATTTATAATGATGACAAACAGACAATGAGTGCGATTCAATTT
    TTAGATGCCTTTCAAATTTCTCCCAAAGATTTACGCATGTCTGACCAAATGTCAATACAA
    TACCTGAATAATGATTTCTGGAGTAATTGCGAAAAATATTTAAAAGTTGCTATAGATCAA
    TTTTCAAATTATAGTATCTCATCTCAAGTTTCTAACTATCATTTCACAGTATTACTTGGA
    GATCGCCAAAAACCACTTATGTATCTAAATAAAAATCGCGGTGGTGATGGTGGCATACCA
    GGTTATATTATGATTTATTTAGTGCCGAGTACAAGTACAATTAATTCTATGAAAAGCTTA
    ATTGCACATGAAGTAAATCATAATATGCGCTATCAATATATTGATTGGGATGGCGGAAGT
    TTGATTGAATTGATTATTGCAGAAGGATTAGCTGAAAACTATGTAGAATCATTGTATGGT
    AAAGCGCATATTGGACCGTGGGTAACAAATACTAATTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    639

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS12895 [old locus tag: SAUSA300_2334 ]
  • symbol: SAUSA300_RS12895
  • description: peptidase
  • length: 212
  • theoretical pI: 6.68031
  • theoretical MW: 24458.8
  • GRAVY: -0.321226

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SAUSA300_2334
  • PFAM:
    Peptidase_MA (CL0126) DUF2268; Predicted Zn-dependent protease (DUF2268) (PF10026; HMM-score: 96.6)
    and 1 more
    no clan defined DUF6055; Family of unknown function (DUF6055) (PF19527; HMM-score: 12.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.5647
    • Cytoplasmic Membrane Score: 0.3068
    • Cell wall & surface Score: 0.0007
    • Extracellular Score: 0.1278
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00175
    • TAT(Tat/SPI): 0.000166
    • LIPO(Sec/SPII): 0.000218
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYKINIIRSDSVYNNILKAPINDRDSIFTKEILVPFKKKFEVQHMPIYNDDKQTMSAIQFLDAFQISPKDLRMSDQMSIQYLNNDFWSNCEKYLKVAIDQFSNYSISSQVSNYHFTVLLGDRQKPLMYLNKNRGGDGGIPGYIMIYLVPSTSTINSMKSLIAHEVNHNMRYQYIDWDGGSLIELIIAEGLAENYVESLYGKAHIGPWVTNTN

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • data available for JSNZ

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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