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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS10935 [old locus tag: SAUSA300_1989 ]
- pan locus tag?: SAUPAN005275000
- symbol: SAUSA300_RS10935
- pan gene symbol?: agrB
- synonym:
- product: accessory gene regulator AgrB
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS10935 [old locus tag: SAUSA300_1989 ]
- symbol: SAUSA300_RS10935
- product: accessory gene regulator AgrB
- replicon: chromosome
- strand: +
- coordinates: 2146942..2147511
- length: 570
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (2146942..2147511) NCBI
- BioCyc: SAUSA300_RS10935 BioCyc
- MicrobesOnline: see SAUSA300_1989
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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541TTGAATTATTTTGATAATAAAATTGACCAGTTTGCCACGTATCTTCAAAAGAGAAATAAC
TTAGATCATATTCAATTTTTGCAAGTACGATTAGGGATGCAGGTCTTAGCTAAAAATATA
GGTAAATTAATTGTTATGTATACTATTGCCTATATTTTAAACATTTTTCTGTTTACGTTA
ATTACGAATTTAACATTTTATTTAATAAGAAGACATGCACATGGTGCACATGCACCTTCT
TCTTTTTGGTGTTATGTAGAAAGTATTATACTATTTATACTTTTACCTTTAGTAATAGTA
AATTTTCATATTAACTTTTTAATTATGATTATTTTAACAGTTATTTCTTTAGGTGTAATC
TCAGTATATGCTCCTGCAGCAACTAAAAAGAAGCCCATTCCTGTGCGACTTATTAAACGA
AAAAAATATTATGCGATTATTGTTAGTTTAACCCTTTTCATTATCACACTTATCATCAAA
GAGCCATTTGCCCAATTCATTCAATTAGGCATCATAATAGAAGCTATTACATTATTACCT
ATTTTCTTTATTAAGGAGGACTTAAAATGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS10935 [old locus tag: SAUSA300_1989 ]
- symbol: SAUSA300_RS10935
- description: accessory gene regulator AgrB
- length: 189
- theoretical pI: 10.3336
- theoretical MW: 21929.5
- GRAVY: 0.827513
⊟Function[edit | edit source]
- reaction: EC 3.4.-.-? ExPASy
- TIGRFAM: cxxc_20_cxxc protein (TIGR04104; HMM-score: 6.7)
- TheSEED: see SAUSA300_1989
- PFAM: no clan defined AgrB; Accessory gene regulator B (PF04647; HMM-score: 114.5)and 1 moreDUF4400; Domain of unknown function (DUF4400) (PF14348; HMM-score: 12.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 5
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003149
- TAT(Tat/SPI): 0.000096
- LIPO(Sec/SPII): 0.033947
- predicted transmembrane helices (TMHMM): 5
⊟Accession numbers[edit | edit source]
- GI: 447028451 NCBI
- RefSeq: WP_001105707 NCBI
- UniProt: see SAUSA300_1989
⊟Protein sequence[edit | edit source]
- MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQVLAKNIGKLIVMYTIAYILNIFLFTLITNLTFYLIRRHAHGAHAPSSFWCYVESIILFILLPLVIVNFHINFLIMIILTVISLGVISVYAPAATKKKPIPVRLIKRKKYYAIIVSLTLFIITLIIKEPFAQFIQLGIIIEAITLLPIFFIKEDLK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: AgrA, CodY see SAUSA300_1989
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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