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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS10590 [old locus tag: SAUSA300_1930 ]
- pan locus tag?: SAUPAN005048000
- symbol: SAUSA300_RS10590
- pan gene symbol?: —
- synonym:
- product: phage tail tape measure protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS10590 [old locus tag: SAUSA300_1930 ]
- symbol: SAUSA300_RS10590
- product: phage tail tape measure protein
- replicon: chromosome
- strand: -
- coordinates: 2096778..2101307
- length: 4530
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (2096778..2101307) NCBI
- BioCyc: SAUSA300_RS10590 BioCyc
- MicrobesOnline: see SAUSA300_1930
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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 4501ATGGGAGAAAGAATAAAAGGTTTATCTATAGGTTTGGATTTAGATGCAGCAAATTTAAAT
 AGATCATTTGCAGAAATCAAACGAAACTTTAAAACTTTAAATTCTGACTTAAAATTAACA
 GGCAACAACTTCAAATATACCGAAAAATCAACTGATAGTTACAAACAAAGGATTAAAGAA
 CTTGATGGAACTATCACAGGTTATAAGAAAAACGTTGATGATTTAGCTAAGCAATATGAC
 AAGGTATCTCAAGAACAGGGCGAAAACAGTGCAGGAGCTCAAAAGTTACGACAAGAATAT
 AACAAACAAGCAAATGAACTGAATTATTTAGAAAGAGAATTACAAAAAACATCAGCCGAA
 TTTGAAGAGTTCAAAAAAGCTCAAGTTGAAGCTCAAAGAATGGCAGAAAGTGGCTGGGGA
 AAAACCAGTAAAGTTTTTGAAAGTATGGGACCTAAATTAACAAAAATGGGTGATGGTTTA
 AAATCCATTGGTAAAGGCATGATGATTGGTGTAACTGCACCTGTTTTAGGTATCGCAGCA
 GCATCAGGAAAAGCTTTTGCAGAAGTTGATAAAGGTTTAGATACTGTTACTCAAGCAACA
 GGCGCAACAGGCAGTGAATTAAAAAAATTGCAGAACTCATTTAAAGATGTTTATGGCAAT
 TTTCCAGCAGATGCTGAAACTGTTGGTGGAGTTTTAGGAGAAGTTAATACAAGATTAGGT
 TTTACAGGTAAAGAACTTGAAAATGCCACAGAGTCATTCTTGAAATTCAGTCATATAACA
 GGTTCTGACGGTGTGCAAGCCGTACAGTTAATTACCCGTGCAATGGGCGATGCAGGTATC
 GAAGCAAGTGAATATCAAAGTGTTTTGGATATGGTAGCAAAAGCGGCGCAAGCTAGTGGG
 ATAAGTGTTGACACATTAGCTGATAGTATTACTAAATACGGCGCTCCAATGAGAGCTATG
 GGCTTTGAGATGAAAGAATCAATTGCTTTATTCTCTCAATGGGAAAAGTCAGGCGTTAAT
 ACTGAAATAGCATTCAGTGGTTTGAAAAAAGCTATATCAAATTGGGGTAAAGCTGGTAAA
 AACCCAAGAGAAGAATTTAAGAAGACATTAGCAGAAATTGAAAAGACGCCGGATATAGCT
 AGCGCAACTATTTTAGCGATTGAAGCATTTGGTGCAAAGGCAGGTCCTGATTTAGCAGAC
 GCTATTAAAGGTGGTCGCTTTAGTTATCAAGAATTTTTAAAAACTATTGAAGATTCCCAA
 GGCACAGTAAACCAAACATTTAAAGATTCTGAAAGTGGCTCCGAAAGATTTAAAGTAGCA
 ATGAATAAATTAAAATTAGTAGGTGCTGATGTATGGGCTTCTATTGAAAGTGCGTTTGCT
 CCAGTCATGGAAGAATTAATAAAAAAGCTATCAGTCGCTGTCGATTGGTTTTCGAATTTA
 AGTGATGGTTCTAAAAGATCAATTGTTATTTTCGGTGGTATTGCTGCTGCAATTGGTCCT
 GTAGTTTTTGGGTTAGGTGCATTTATAAGCACAATTGGTAATGCAGTAACTGTATTAGCC
 CCACTATTAGCTGGTATTGCAAAGGCTGATGGATTAATTAGTTTTTTATCGACTAAAGTA
 CCTATATTAGGAACTGTCTTCACAGCTTTAACTGGTCCAATTGGCATTGTATTAGGTGTT
 TTAGCTGGCCTAGCAGTCGCATTTACAATTGCTTATAAGAAATCTGAAACATTTAGAAAT
 TTTGTTAATGATGCAATTGAAAGTGTTAAACAAACATTTAGTAATTTTATTCAATTTATT
 CAACCTTTCATTGATTCCGTTAAAAACGTCTTTAAACAAGCGGTTTCAGCAATCGTTGAT
 TTCGCTAAAGATATTTGGAGTCAAATTAATGGATTCTTTAATGAAAACGGAATTTCTATT
 GTTCAAGCGCTTCAAAATATATGCAATTTTATCAAAGTTATATTTGAATTTATCTTAAAT
 TTTGTAATTAAACCAATAATGTTTGCAATCTGGCAAGTGATGCAATTTATTTGGCCGGCG
 GTTAAAGCCTTGATTGTCAGTACTTGGGAGAATATAAAAGGTGTGATACAAGGAACTTTA
 AATATCATACTAGGTTTAATTAAGTTCTTCTCAAGTTTATTTACTGGAGATTGGCGAGGA
 GTTTGGGACGCGATTATTATGATTCTTAAAGGAGTCGTTCAATTAATATGGAATTTAATT
 CAATTATGGTTTGTAGGCAAAATACTTGGCGTTGTTAGGTACTTTGGCGGATTGCTAAAA
 GGATTAATAACAGGTATTTGGGACGTAATAAAAAGTATATTCAGTAAATCTTTATCAGCA
 ATTTGGAATGCGACAAAAAGTATTTTTGGATTCTTATTTAATAGTGTCAAATCAATTTTC
 ACGAATATGAAAAATTGGTTATCTAACACATGGAGTAGTATCCGTACGAATACGATAGGA
 AAAGCACAGTCATTATTTAGTGGTGTGAAATCAAAATTCACTAGTTTGTGGAATGCGACA
 AAAGATATTTTTAGTAATCTAAGAAATTGGATGGCAAATATTTGGAATTCCATTAAAGAT
 AATACGGTTGGAATTGCAAGTCGTTTATGGAGTAAAGTGCGTGGAATTTTTACAAATATG
 CGTGACGGCTTACAAAGTATTATCAGCAAAATTAAAAGTCATATCGGCGGTATGGTAGAT
 GCTATTAAAAAAGGACTTAATAAATTAATTGAAGGTTTAAACTGGGTCGGTGGTAAGCTG
 GGAATGGATAAAATACCTAAGTTACACACTGGTACAGAACACACACATACTACTACAAGA
 TTAGTTAAGAACGGTAAGATTGCGCGGGATACGTTCGCTACGGTTGGGGATAAAGGACGT
 GGAAATGGTCCGAATGGTTTCAGAAATGAAATAATTGAATTCCCTAATGGTAAACGTGTA
 ATCACACCTAATACAGATACTACCGCTTATTTACCTAAAGGCTCAAAAGTATACAACGGT
 ACACAAACTTATTCAATGTTAAACGGAACGCTTCCAAGATTTAGCTTAGGTACTATGTGG
 AAAGATATTAAATCCGGTGCATCATCGGCATTTAACTGGACAAAAGATCAAATAGGTAAA
 GGTACCAAATGGCTTGGCGATAAAGTTGGCGATGTTTTAGATTTTATGGAAAATCCTGGC
 AAACTTTTAAATTATATACTTGAAGCTTTTGGAATTGATTTCAATTCTTTAACTAAAGGT
 ATGGGAATTGCAGGCGACATAACAAAAGCTGCATGGTCTAAGATTAAGAAAAGTGCTACT
 GATTGGATAAAAGAAAATTTAGAAGCTATGGGCGGTGGCGATTTAGTCGGCGGAATATTA
 GACCCTGACAAAATTAATTATCATTATGGACGTACCGCAGCTTATACTGCTGCAACTGGA
 AGACCATTTCATGAAGGTGTCGATTTTCCATTTGTATATCAAGAAGTTAGAACGCCGATG
 GGTGGCAGACTTACAAGAATGCCATTTATGTCTGGTGGTTATGGTAATTATGTAAAAATT
 ACTAGTGGAGTTATCGATATGCTATTTGCGCATTTGAAAAACTTTAGCAAATCACCACCT
 AGTGGCACGATGGTAAAGCCCGGCGATGTTGTTGGTTTAACTGGTAATACCGGATTTAGT
 ACAGGACCACACTTACATTTTGAAATGAGAAGAAATGGACGTCACTTTGACCCTGAACCA
 TATTTAAGAAATGCAAAGAAAAAAGGTAGGTTATCAATTGGTGGCGGTGGTGCTACTTCT
 GGAAGTGGTGCAACTTATGCAAGCCGAGTAATCCGTCAAGCGCAAAGTATTTTAGGAGGA
 CGTTATAAAGGTAAGTGGATTCATGACCAGATGATGCGAGTTGCAAAGCGTGAAAGTAAC
 TATCAATCAAATGCAGTGAATAATTGGGATATTAATGCTCAAAGAGGAGACCCATCAAGA
 GGATTATTCCAAATCATCGGCTCAACTTTTAGAGCAAACGCTAAACGTGGATATACTAAC
 TTTAATAATCCGGTTCATCAAGGTATTTCAGCAATGCAGTACATTGTTAGACGCTACGGT
 TGGGATGGATTTAAGCGTGCTGGTGATTACGCATATGCTACAGGTGGAAAAGTTTTTGAT
 GGTTGGTATAACTTAGGTGAAGACGGTCATCCAGAATGGATTATTCCAACAGATCCAGCT
 CGTAGAAATGATGCAATGAAGATGTTGCATTATGCAGCAGCAGAAGTAAGAGGGAGAAAA
 GCGAGTAAAAATAAGCGTCCTAGTCAATTGTCTAGTGTAAATGGGTTTGATGACCCAAGC
 TTATTATTGAAAATGATTGAACAACAGCAACAACAAATAGCTTTATTACTGAAAATAGCG
 CAATCCAACGATGTGATTGCAGATAAAGATTATCAGCCGATTATTGACGAATACGCTTTT
 GATAAAAAGGTGAACGCGTCTATAGAAAAGCGAGAAAGGCAAGAATCAACAAAAGTAAAG
 TTTAGAAAAGGAGGAATTGCTATTCAATGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS10590 [old locus tag: SAUSA300_1930 ]
- symbol: SAUSA300_RS10590
- description: phage tail tape measure protein
- length: 1509
- theoretical pI: 10.2249
- theoretical MW: 165607
- GRAVY: -0.194433
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage tail tape measure protein, TP901 family, core region (TIGR01760; HMM-score: 65)and 13 moreCellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 25.5)DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 25.5)Cellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 22)DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 22)two transmembrane protein (TIGR04527; HMM-score: 17.8)WXG100 family type VII secretion target (TIGR03930; HMM-score: 13.5)Unknown function Enzymes of unknown specificity quinoprotein relay system zinc metallohydrolase 2 (TIGR04559; EC 3.-.-.-; HMM-score: 13.5)DNA metabolism DNA replication, recombination, and repair DnaD domain protein (TIGR01446; HMM-score: 13.2)Mobile and extrachromosomal element functions Prophage functions DnaD domain protein (TIGR01446; HMM-score: 13.2)SH3 domain protein (TIGR04211; HMM-score: 13.1)Protein synthesis tRNA aminoacylation serine--tRNA ligase (TIGR00414; EC 6.1.1.11; HMM-score: 11.3)Protein fate Protein folding and stabilization prefoldin, alpha subunit (TIGR00293; HMM-score: 7.3)phasin (TIGR01985; HMM-score: 6.7)
- TheSEED: see SAUSA300_1930
- PFAM: no clan defined PhageMin_Tail; Phage-related minor tail protein (PF10145; HMM-score: 72.3)Hybrid (CL0105) Peptidase_M23; Peptidase family M23 (PF01551; HMM-score: 64.3)and 46 moreLysozyme (CL0037) SLT; Transglycosylase SLT domain (PF01464; HMM-score: 22.2)no clan defined DUF948; Bacterial protein of unknown function (DUF948) (PF06103; HMM-score: 21)TMP_3; Tape measure protein (PF20155; HMM-score: 20.9)Laminin_I; Laminin Domain I (PF06008; HMM-score: 18.3)OVT1; Major antigen, helical domain (PF24423; HMM-score: 17.6)ATG17_like; Autophagy protein ATG17-like domain (PF04108; HMM-score: 17.1)APG6_N; Apg6 coiled-coil region (PF17675; HMM-score: 16.8)TPR_MLP1_2; TPR/MLP1/MLP2-like protein (PF07926; HMM-score: 15.2)Collagen_mid; Bacterial collagen, middle region (PF15984; HMM-score: 15.2)Pec_lyase-like (CL0268) FapA; Flagellar Assembly Protein A beta solenoid domain (PF03961; HMM-score: 14.8)no clan defined YtxH; YtxH-like protein (PF12732; HMM-score: 14.7)Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 14.6)YebO; YebO-like protein (PF13974; HMM-score: 14.3)Crescentin; Crescentin protein (PF19220; HMM-score: 14.2)DUF7801; Domain of unknown function (DUF7801) (PF25078; HMM-score: 14)Lysozyme (CL0037) SLT_3; Lysozyme like domain (PF18896; HMM-score: 13.9)no clan defined DUF745; Protein of unknown function (DUF745) (PF05335; HMM-score: 13.5)EzrA; Septation ring formation regulator, EzrA (PF06160; HMM-score: 12.8)EsxAB (CL0352) WXG100; Proteins of 100 residues with WXG (PF06013; HMM-score: 12.5)no clan defined FlaC_arch; Flagella accessory protein C (FlaC) (PF05377; HMM-score: 12.2)TPR (CL0020) COG3_N; Conserved oligomeric Golgi complex subunit 3, N-terminal (PF04136; HMM-score: 11.7)no clan defined TMP_N; Tape measure protein N-terminal (PF24164; HMM-score: 11.7)IL32; Interleukin 32 (PF15225; HMM-score: 11.4)Fez1; Fez1 (PF06818; HMM-score: 10.9)DUF7217; Domain of unknown function (DUF7217) (PF23854; HMM-score: 10.8)DUF16; Protein of unknown function DUF16 (PF01519; HMM-score: 10.7)MscS_porin; Mechanosensitive ion channel porin domain (PF12795; HMM-score: 10.7)GAS; Growth-arrest specific micro-tubule binding (PF13851; HMM-score: 10.6)TPR (CL0020) Dor1; Dor1-like family (PF04124; HMM-score: 10.4)no clan defined BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2 (PF10046; HMM-score: 10.4)Phage_GPO; Phage capsid scaffolding protein (GPO) serine peptidase (PF05929; HMM-score: 10.3)tRNA_bind_arm (CL0298) Seryl_tRNA_N; Seryl-tRNA synthetase N-terminal domain (PF02403; HMM-score: 10.2)no clan defined HAUS-augmin3; HAUS augmin-like complex subunit 3 (PF14932; HMM-score: 9.9)CENP-F_leu_zip; Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 (PF10473; HMM-score: 9.5)Exonuc_VII_L; Exonuclease VII, large subunit (PF02601; HMM-score: 9.1)Occludin_ELL; Occludin homology domain (PF07303; HMM-score: 8.9)SNARE-fusion (CL0445) Syntaxin; Syntaxin (PF00804; HMM-score: 8.7)VBS-like (CL0705) HIP1_clath_bdg; Clathrin-binding domain of Huntingtin-interacting protein 1 (PF16515; HMM-score: 8.4)no clan defined HAUS6_N; HAUS augmin-like complex subunit 6 N-terminus (PF14661; HMM-score: 8.3)DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 8.2)Adhesin_P1_N; Adhesin P1 N-terminal domain (PF18652; HMM-score: 8.2)TMP_2; Prophage tail length tape measure protein (PF06791; HMM-score: 7.7)Tho2; Transcription factor/nuclear export subunit protein 2 (PF11262; HMM-score: 7.6)Carbpep_Y_N; Carboxypeptidase Y pro-peptide (PF05388; HMM-score: 7.4)OmpH; Outer membrane protein (OmpH-like) (PF03938; HMM-score: 6.9)Fib_alpha; Fibrinogen alpha/beta chain family (PF08702; HMM-score: 6.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 2
 
- DeepLocPro: Extracellular- Cytoplasmic Score: 0.0002
- Cytoplasmic Membrane Score: 0.4883
- Cell wall & surface Score: 0.0128
- Extracellular Score: 0.4988
 
- LocateP:
- SignalP: no predicted signal peptide- SP(Sec/SPI): 0.021777
- TAT(Tat/SPI): 0.002579
- LIPO(Sec/SPII): 0.001583
 
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
- GI: 486200476 NCBI
- RefSeq: WP_001549166 NCBI
- UniProt: see SAUSA300_1930
⊟Protein sequence[edit | edit source]
- MGERIKGLSIGLDLDAANLNRSFAEIKRNFKTLNSDLKLTGNNFKYTEKSTDSYKQRIKELDGTITGYKKNVDDLAKQYDKVSQEQGENSAGAQKLRQEYNKQANELNYLERELQKTSAEFEEFKKAQVEAQRMAESGWGKTSKVFESMGPKLTKMGDGLKSIGKGMMIGVTAPVLGIAAASGKAFAEVDKGLDTVTQATGATGSELKKLQNSFKDVYGNFPADAETVGGVLGEVNTRLGFTGKELENATESFLKFSHITGSDGVQAVQLITRAMGDAGIEASEYQSVLDMVAKAAQASGISVDTLADSITKYGAPMRAMGFEMKESIALFSQWEKSGVNTEIAFSGLKKAISNWGKAGKNPREEFKKTLAEIEKTPDIASATILAIEAFGAKAGPDLADAIKGGRFSYQEFLKTIEDSQGTVNQTFKDSESGSERFKVAMNKLKLVGADVWASIESAFAPVMEELIKKLSVAVDWFSNLSDGSKRSIVIFGGIAAAIGPVVFGLGAFISTIGNAVTVLAPLLAGIAKADGLISFLSTKVPILGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNDAIESVKQTFSNFIQFIQPFIDSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQALQNICNFIKVIFEFILNFVIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGVIQGTLNIILGLIKFFSSLFTGDWRGVWDAIIMILKGVVQLIWNLIQLWFVGKILGVVRYFGGLLKGLITGIWDVIKSIFSKSLSAIWNATKSIFGFLFNSVKSIFTNMKNWLSNTWSSIRTNTIGKAQSLFSGVKSKFTSLWNATKDIFSNLRNWMANIWNSIKDNTVGIASRLWSKVRGIFTNMRDGLQSIISKIKSHIGGMVDAIKKGLNKLIEGLNWVGGKLGMDKIPKLHTGTEHTHTTTRLVKNGKIARDTFATVGDKGRGNGPNGFRNEIIEFPNGKRVITPNTDTTAYLPKGSKVYNGTQTYSMLNGTLPRFSLGTMWKDIKSGASSAFNWTKDQIGKGTKWLGDKVGDVLDFMENPGKLLNYILEAFGIDFNSLTKGMGIAGDITKAAWSKIKKSATDWIKENLEAMGGGDLVGGILDPDKINYHYGRTAAYTAATGRPFHEGVDFPFVYQEVRTPMGGRLTRMPFMSGGYGNYVKITSGVIDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRRNGRHFDPEPYLRNAKKKGRLSIGGGGATSGSGATYASRVIRQAQSILGGRYKGKWIHDQMMRVAKRESNYQSNAVNNWDINAQRGDPSRGLFQIIGSTFRANAKRGYTNFNNPVHQGISAMQYIVRRYGWDGFKRAGDYAYATGGKVFDGWYNLGEDGHPEWIIPTDPARRNDAMKMLHYAAAEVRGRKASKNKRPSQLSSVNGFDDPSLLLKMIEQQQQQIALLLKIAQSNDVIADKDYQPIIDEYAFDKKVNASIEKRERQESTKVKFRKGGIAIQ
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]