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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS06775 [old locus tag: SAUSA300_1248 ]
  • pan locus tag?: SAUPAN003739000
  • symbol: SAUSA300_RS06775
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS06775 [old locus tag: SAUSA300_1248 ]
  • symbol: SAUSA300_RS06775
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1370690..1370986
  • length: 297
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGCAAATAGAACTTACTGATGCAGCAGTAACTTGGTTTAAAAATGAACTTGAGTTGCCT
    GAAAATAATAAAGTGCTCGTGTTTTTTGTAAGATATGGTGGCGAATTCCAACTCAAGCAA
    GGATTTAGTCCTGCTTTTACAGTTGAACCAAAGGAAGATGTTGATATTGGCTATGAACAA
    CAATATGACGATTTAAATGTTGTCGTAGCGGAAAAAGATTTGTGGTACTTTGAAGATGAC
    CACATTATTGTAAATGTAGTTGATCACGAAGATGAAATTTCTTATTCCACAAAATAA
    60
    120
    180
    240
    297

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS06775 [old locus tag: SAUSA300_1248 ]
  • symbol: SAUSA300_RS06775
  • description: hypothetical protein
  • length: 98
  • theoretical pI: 3.87549
  • theoretical MW: 11495.6
  • GRAVY: -0.387755

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other IscR-regulated protein YhgI (TIGR03341; HMM-score: 12.6)
  • TheSEED: see SAUSA300_1248
  • PFAM:
    no clan defined Fe-S_biosyn; Iron-sulphur cluster biosynthesis (PF01521; HMM-score: 23.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8866
    • Cytoplasmic Membrane Score: 0.1011
    • Cell wall & surface Score: 0.0007
    • Extracellular Score: 0.0117
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003119
    • TAT(Tat/SPI): 0.00022
    • LIPO(Sec/SPII): 0.000294
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQIELTDAAVTWFKNELELPENNKVLVFFVRYGGEFQLKQGFSPAFTVEPKEDVDIGYEQQYDDLNVVVAEKDLWYFEDDHIIVNVVDHEDEISYSTK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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