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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS03415 [old locus tag: SAUSA300_0637 ]
  • pan locus tag?: SAUPAN002529000
  • symbol: SAUSA300_RS03415
  • pan gene symbol?: dhaL
  • synonym:
  • product: dihydroxyacetone kinase subunit L

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS03415 [old locus tag: SAUSA300_0637 ]
  • symbol: SAUSA300_RS03415
  • product: dihydroxyacetone kinase subunit L
  • replicon: chromosome
  • strand: +
  • coordinates: 712225..712809
  • length: 585
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAAAGTGAATGATATGAAAGCACGTTTATTAAATTTAGAAGAAACGTTTAAAAAACAT
    GAATCTGAATTAACTGAATTAGATCGAGCAATTGGTGATGGTGACCACGGGGTTAACATG
    GTTCGTGGGTTTAGTAGTCTTAAAGACAAACTTGATGATAGCTCAATGCAATCATTGTTC
    AAATCAACTGGTATGGCATTGATGTCAAATGTTGGGGGTGCATCAGGACCACTGTATGGC
    TTTAGCTTTGTTAAAATGTCTGCAGTCACCAAAGATGATATGGATAATCAAGATTTCATT
    ACACTAATTCAGGCATTTGCCGAAGCGGTTGAATCACGTGGTAAAGTTACTTTAAATGAA
    AAGACAATGTATGATGTAGTAGCGCGAGCAGCAGAGAAGCTTAAAAATGGTGAAACTTTA
    ACATTCAATGATTTACAGCAATTAGCAGATAATACAAAAGATATGGTAGCAACGAAAGGT
    AGAGCTGCATATTTTGGAGAAGAATCAAAAGGTTATATTGATCCAGGTGCTCAAAGTATG
    GTTTATATTTTAAACGCTTTGATTGGAGATGAAGATAATGCCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    585


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS03415 [old locus tag: SAUSA300_0637 ]
  • symbol: SAUSA300_RS03415
  • description: dihydroxyacetone kinase subunit L
  • length: 194
  • theoretical pI: 4.53188
  • theoretical MW: 21260.9
  • GRAVY: -0.384021

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.1.-?  ExPASy
  • TIGRFAM:
    dihydroxyacetone kinase, L subunit (TIGR02365; EC 2.7.-.-; HMM-score: 240.1)
    and 2 more
    dihydroxyacetone kinase (TIGR02361; EC 2.7.1.29; HMM-score: 79.3)
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS7 (TIGR01029; HMM-score: 13.5)
  • TheSEED: see SAUSA300_0637
  • PFAM:
    no clan defined Dak2; DAK2 domain (PF02734; HMM-score: 153.4)
    and 3 more
    ATPgrasp_N; ATP-grasp N-terminal domain (PF18130; HMM-score: 13.7)
    Phage_TACs (CL0567) Phage_TAC_12; Phage tail assembly chaperone protein, TAC (PF12363; HMM-score: 12.9)
    no clan defined Cluap1; Clusterin-associated protein-1 (PF10234; HMM-score: 9.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9636
    • Cytoplasmic Membrane Score: 0.0075
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.0286
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.015718
    • TAT(Tat/SPI): 0.000729
    • LIPO(Sec/SPII): 0.000894
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKVNDMKARLLNLEETFKKHESELTELDRAIGDGDHGVNMVRGFSSLKDKLDDSSMQSLFKSTGMALMSNVGGASGPLYGFSFVKMSAVTKDDMDNQDFITLIQAFAEAVESRGKVTLNEKTMYDVVARAAEKLKNGETLTFNDLQQLADNTKDMVATKGRAAYFGEESKGYIDPGAQSMVYILNALIGDEDNA

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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