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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_2029 [new locus tag: SAUSA300_RS11165 ]
  • pan locus tag?: SAUPAN005343000
  • symbol: SAUSA300_2029
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_2029 [new locus tag: SAUSA300_RS11165 ]
  • symbol: SAUSA300_2029
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2190209..2190700
  • length: 492
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGAGGGATTATAATTTTATGTCACCACACGCTAAAAAAGTGATGAGGTTAAGTGCTGTG
    CTGTTTTGGATACCCATAGCGCTTGTACTTTTAATCGCATTTAATATTTTGAACTGGCTA
    TTTTGGGAGATTTTAGATAACCATTTATCCATTGTTAGTAGTGTGATTATAATATTACTT
    GTTGCTGTTTTCACGCTTGTTATAGCGCCAGTCTATCGATATAAGCACTGCAGATATGCA
    TTTGAAAAACACCATTTGCGTGTACGAAACGGCATTTTATTTTTGGATGAAAAGGTAATA
    CCATATTTTCGTATTCAAAATATTGATATCGATGTTGGTCCTATAATGAGACGCTATCGA
    TTAGCAACTTTGACCCTTTATACAGCGGGTGGTCAAGCTGAAATTGAATTAATAGATAGA
    AGTGAAGCACGTAGATTGAAACGATGGTTAAATAACGAGAGACATTTAGAAAACAATAAA
    AATGAGGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    492

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_2029 [new locus tag: SAUSA300_RS11165 ]
  • symbol: SAUSA300_2029
  • description: hypothetical protein
  • length: 163
  • theoretical pI: 9.99463
  • theoretical MW: 19404.8
  • GRAVY: 0.134356

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Hypothetical protein, ydbS homolog
    Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles CPO analysis  Hypothetical protein, ydbS homolog
  • PFAM:
    PH (CL0266) bPH_2; Bacterial PH domain (PF03703; HMM-score: 69.8)
    and 7 more
    no clan defined DUF2207; Predicted membrane protein (DUF2207) (PF09972; HMM-score: 16.3)
    PH (CL0266) Rtt106; Histone chaperone Rttp106-like (PF08512; HMM-score: 15.4)
    no clan defined RseC_MucC; Positive regulator of sigma(E), RseC/MucC (PF04246; HMM-score: 12.7)
    PH (CL0266) bPH_3; Bacterial PH domain (PF14470; HMM-score: 12.7)
    no clan defined DUF3974; Domain of unknown function (DUF3974) (PF13120; HMM-score: 12.1)
    YlaC; Inner membrane protein YlaC (PF10777; HMM-score: 10)
    DUF4191; Domain of unknown function (DUF4191) (PF13829; HMM-score: 6.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.78
    • Cytoplasmic Membrane Score: 8.16
    • Cellwall Score: 0.06
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001121
    • TAT(Tat/SPI): 0.000164
    • LIPO(Sec/SPII): 0.013465
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRDYNFMSPHAKKVMRLSAVLFWIPIALVLLIAFNILNWLFWEILDNHLSIVSSVIIILLVAVFTLVIAPVYRYKHCRYAFEKHHLRVRNGILFLDEKVIPYFRIQNIDIDVGPIMRRYRLATLTLYTAGGQAEIELIDRSEARRLKRWLNNERHLENNKNEE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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