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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_1942
- pan locus tag?: SAUPAN001377000
- symbol: SAUSA300_1942
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_1942
- symbol: SAUSA300_1942
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2109343..2109777
- length: 435
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3914966 NCBI
- RefSeq: YP_494593 NCBI
- BioCyc:
- MicrobesOnline: 1293457 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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421TTGGGGAACGGGGAGGGGCTCGACTTCGCGATAATTTTAAAAATCCATGTATACCCCCCC
TCTTATAACCATTTTAAGGCAGGTGATGAAATGGAGATTATAGTTGATGAAAACTTAGTG
CTTAAAGAAAAAGAAAGGCTGCAAGTATTATATAAAGACATACCTAGCAATAAATTAAAA
GTAGTTGATGGTTTAATTATTCAAGCAGCAAGGCTACGTGTAATGCTTGATTACATGTGG
GAAGACATAAAAGAAAAAGGTGACTATGATTTATTTACTCAATCTGAAAAGGCGCCACCA
TATGAAAGGGAAAGACCAGTAGCCAAACTATTTAATGCTAGAGATGCTGCATATCAAAAA
ATAATCAAACAATTATCGGATTTATTGCCCGAAGAGAAAGAAGACACAGAAACGCCATCT
GATGATTACCTATGA60
120
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435
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_1942
- symbol: SAUSA300_1942
- description: hypothetical protein
- length: 144
- theoretical pI: 4.51402
- theoretical MW: 16734
- GRAVY: -0.543056
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9539
- Cytoplasmic Membrane Score: 0.0016
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0445
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005034
- TAT(Tat/SPI): 0.000139
- LIPO(Sec/SPII): 0.000858
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MGNGEGLDFAIILKIHVYPPSYNHFKAGDEMEIIVDENLVLKEKERLQVLYKDIPSNKLKVVDGLIIQAARLRVMLDYMWEDIKEKGDYDLFTQSEKAPPYERERPVAKLFNARDAAYQKIIKQLSDLLPEEKEDTETPSDDYL
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]