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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1566 [new locus tag: SAUSA300_RS08540 ]
  • pan locus tag?: SAUPAN004205000
  • symbol: SAUSA300_1566
  • pan gene symbol?: —
  • synonym: pxpB
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1566 [new locus tag: SAUSA300_RS08540 ]
  • symbol: SAUSA300_1566
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1715662..1716363
  • length: 702
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGATTTATTTTGAAAATAAAATATCCGAAGAGACATATCGTAATGTCACAGCAATGGTA
    CGGTGGATACGAGAAAAAGAAATATTAGAAATTCAAGATATTGTCCCTTCGTATCGAGCA
    GTTCTAATATATTTTGATGAACAAGCTATAACATCTTCTAAATTAATTGAAAATTTAGAA
    CTTAACAAATTTAATGAAAAAAATGTTCATGCTGTGAATCAAACCAATCGTATTATTAAA
    ATACCTGTTCAATATGGTGGTACATATGGACCAGATATTGAAGAAGTAGCAAAGCATAAT
    CGAATAACTGTTGAGCAAGTTATTGAAAAACATACAAGTAAACCTTATTTAATATATATG
    CTAGGATTTATGCCAGGATTTCCATACTTAGGCGGACTTGATGAACAACTACATACACCT
    AGACGTAATCAGCCAAGGTTAAAAATTCATGCAGGTTCTGTAGGTATTGCGAATAATCAA
    ACAGGACTATATCCATCAGATTCTCCTGGCGGATGGCAAATTATTGGACGCACACCGTTA
    AAAGTATTTAGCAGCGAGCGTGAACCAATGTCAATGTACGAAGCAGGAGAATGGATACAA
    TTTTATGCAATAGATGAACAGAAATTTATACAAATCGAAAGAGATATATCAGATGGCAAC
    TTTAATGTTGATGACTGGGTGGTGATTGAAAATGTCAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    702


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1566 [new locus tag: SAUSA300_RS08540 ]
  • symbol: SAUSA300_1566
  • description: hypothetical protein
  • length: 233
  • theoretical pI: 5.01152
  • theoretical MW: 27001.4
  • GRAVY: -0.435193

⊟Function[edit | edit source]

  • TIGRFAM:
    Hypothetical proteins Conserved sensor histidine kinase inhibitor, KipI family (TIGR00370; HMM-score: 196.8)
    and 1 more
    Metabolism Central intermediary metabolism Nitrogen metabolism urea carboxylase (TIGR02712; EC 6.3.4.6; HMM-score: 48.1)
  • TheSEED  :
    • 5-oxoprolinase subunit B (EC 3.5.2.9)
    Allophanate hydrolase 2 and Biotin carboxylase cluster  Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)
    and 1 more
    EC699-706  Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)
  • PFAM:
    Cyclophil-like (CL0475) CT_C_D; Carboxyltransferase domain, subdomain C and D (PF02682; HMM-score: 232.2)
    and 1 more
    no clan defined RepB_C; Replication protein RepB, C-terminal (PF21861; HMM-score: 15.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9617
    • Cytoplasmic Membrane Score: 0.0374
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0007
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001097
    • TAT(Tat/SPI): 0.000098
    • LIPO(Sec/SPII): 0.000231
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIYFENKISEETYRNVTAMVRWIREKEILEIQDIVPSYRAVLIYFDEQAITSSKLIENLELNKFNEKNVHAVNQTNRIIKIPVQYGGTYGPDIEEVAKHNRITVEQVIEKHTSKPYLIYMLGFMPGFPYLGGLDEQLHTPRRNQPRLKIHAGSVGIANNQTGLYPSDSPGGWQIIGRTPLKVFSSEREPMSMYEAGEWIQFYAIDEQKFIQIERDISDGNFNVDDWVVIENVN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CcpA regulon
    CcpA(TF)important in Carbon catabolism; RegPrecise 

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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