Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN006318000
- symbol?: cudT
- synonym:
- description?: choline transporter BetT
- choline transporter BetT
- choline transporter
- BCCT family choline/carnitine/betaine transporter
- BCCT family osmoprotectant transporter
- BCCT family transporter
- glycine betaine transporter, putative
- BCCT family betaine/carnitine/choline transporter
- Choline/carnitine/betaine transporter
- choline/carnitine/betaine transporter, BCCT family
- choline transport protein
- High-affinity choline uptake protein BetT
- transporter, betaine/carnitine/choline transporter (BCCT) family protein
- transporter, betaine/carnitine/choline transporter family protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6362133..6363737
- synteny block?: BlockID0050340
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2553 (betT)
08BA02176:
C248_2675 (cudT)
11819-97:
MS7_2620
6850:
RSAU_002456 (cudT)
71193:
ST398NM01_2662
ECT-R 2:
ECTR2_2468
ED133:
SAOV_2660c
ED98:
SAAV_2681 (cudT)
HO 5096 0412:
SAEMRSA15_25190 (cudT)
JH1:
SaurJH1_2691
JH9:
SaurJH9_2637
JKD6008:
SAA6008_02672 (cudT)
JKD6159:
SAA6159_02511 (cudT)
LGA251:
SARLGA251_23870 (cudT)
M013:
M013TW_2592
MRSA252:
SAR2693 (cudT)
MSHR1132:
SAMSHR1132_24310
MSSA476:
SAS2501
Mu3:
SAHV_2599 (cudT)
Mu50:
SAV2615 (cudT)
MW2:
MW2535 (cudT)
RF122:
SAB2489c (cudT)
ST398:
SAPIG2662
T0131:
SAT0131_02848
TCH60:
HMPREF0772_10576 (cudT)
TW20:
SATW20_27530 (cudT)
USA300_TCH1516:
USA300HOU_2610 (betT)
VC40:
SAVC_11940
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKKEKVMDWTTFIGTVAVLLFAVIPMMAFPKASEDIITGINSAISDSIGSIYLFMGLAIF
N315 MKKEKVMDWTTFIGTVAVLLFAVIPMMAFPKASEDIITGINSAISDSIGSIYLFMGLAIF
NCTC8325 MKKEKVMDWTTFIGTVAVLLFAVIPMMAFPKASEDIITGINSAISDSIGSIYLFMGLAIF
Newman MKKEKVMDWTTFIGTVAVLLFAVIPMMAFPKASEDIITGINSAISDSIGSIYLFMGLAIF
USA300_FPR3757 MKKEKVMDWTTFIGTVAVLLFAVIPMMAFPKASEDIITGINSAISDSIGSIYLFMGLAIF
************************************************************
COL CFVMYIAFGKYGNVTLGKASDKPEFNTFTWAAMLFCAGIGSDILYWGVIEWAFYYQVPPN
N315 CFVMYIAFGKYGNVTLGKASDKPEFNTFTWAAMLFCAGIGSDILYWGVIEWAFYYQVPPN
NCTC8325 CFVMYIAFGKYGNVTLGKASDKPEFNTFTWAAMLFCAGIGSDILYWGVIEWAFYYQVPPN
Newman CFVMYIAFGKYGNVTLGKASDKPEFNTFTWAAMLFCAGIGSDILYWGVIEWAFYYQVPPN
USA300_FPR3757 CFVMYIAFGKYGNVTLGKASDKPEFNTFTWAAMLFCAGIGSDILYWGVIEWAFYYQVPPN
************************************************************
COL GAKSMSDEALQYATQYGMFHWGPIAWAIYVLPALPIGYLVFVKKQPVYKISQACRPILKG
N315 GAKSMSDEALQYATQYGMFHWGPIAWAIYVLPALPIGYLVFVKKQPVYKISQACRPILKG
NCTC8325 GAKSMSDEALQYATQYGMFHWGPIAWAIYVLPALPIGYLVFVKKQPVYKISQACRPILKG
Newman GAKSMSDEALQYATQYGMFHWGPIAWAIYVLPALPIGYLVFVKKQPVYKISQACRPILKG
USA300_FPR3757 GAKSMSDEALQYATQYGMFHWGPIAWAIYVLPALPIGYLVFVKKQPVYKISQACRPILKG
************************************************************
COL QTDKFVGKVVDILFIFGLLGGAATSLALGVPLISAGIERLTGLDGKNMILRSAILLTITV
N315 QTDKFVGKVVDILFIFGLLGGAATSLALGVPLISAGIERLTGLDGKNMILRSAILLTITV
NCTC8325 QTDKFVGKVVDILFIFGLLGGAATSLALGVPLISAGIERLTGLDGKNMILRSAILLTITV
Newman QTDKFVGKVVDILFIFGLLGGAATSLALGVPLISAGIERLTGLDGKNMILRSAILLTITV
USA300_FPR3757 QTDKFVGKVVDILFIFGLLGGAATSLALGVPLISAGIERLTGLDGKNMILRSAILLTITV
************************************************************
COL IFAISSYTGLKKGIQKLSDINVWLSFVLLAFIFIIGPTVFIMETTVTGFGNMLRDFFHMA
N315 IFAISSYTGLKKGIQKLSDINVWLSFVLLAFIFIIGPTVFIMETTVTGFGNMLRDFFHMA
NCTC8325 IFAISSYTGLKKGIQKLSDINVWLSFVLLAFIFIIGPTVFIMETTVTGFGNMLRDFFHMA
Newman IFAISSYTGLKKGIQKLSDINVWLSFVLLAFIFIIGPTVFIMETTVTGFGNMLRDFFHMA
USA300_FPR3757 IFAISSYTGLKKGIQKLSDINVWLSFVLLAFIFIIGPTVFIMETTVTGFGNMLRDFFHMA
************************************************************
COL TWLEPFGGIKGRKETNFPQDWTIFYWSWWLVYAPFIGLFIARISKGRRLKEVVLGTIIYG
N315 TWLEPFGGIKGRKETNFPQDWTIFYWSWWLVYAPFIGLFIARISKGRRLKEVVLGTIIYG
NCTC8325 TWLEPFGGIKGRKETNFPQDWTIFYWSWWLVYAPFIGLFIARISKGRRLKEVVLGTIIYG
Newman TWLEPFGGIKGRKETNFPQDWTIFYWSWWLVYAPFIGLFIARISKGRRLKEVVLGTIIYG
USA300_FPR3757 TWLEPFGGIKGRKETNFPQDWTIFYWSWWLVYAPFIGLFIARISKGRRLKEVVLGTIIYG
************************************************************
COL TLGCVLFFGIFGNYAVYLQISGQFNVTQYLNTHGTEATIIEVVHHLPFPSLMIVLFLVSA
N315 TLGCVLFFGIFGNYAVYLQISGQFNVTQYLNTHGTEATIIEVVHHLPFPSLMIVLFLVSA
NCTC8325 TLGCVLFFGIFGNYAVYLQISGQFNVTQYLNTHGTEATIIEVVHHLPFPSLMIVLFLVSA
Newman TLGCVLFFGIFGNYAVYLQISGQFNVTQYLNTHGTEATIIEVVHHLPFPSLMIVLFLVSA
USA300_FPR3757 TLGCVLFFGIFGNYAVYLQISGQFNVTQYLNTHGTEATIIEVVHHLPFPSLMIVLFLVSA
************************************************************
COL FLFLATTFDSGSYILAAASQKKVVGEPLRANRLFWAFALCLLPFSLMLVGGERALEVLKT
N315 FLFLATTFDSGSYILAAASQKKVVGEPLRANRLFWAFALCLLPFSLMLVGGERALEVLKT
NCTC8325 FLFLATTFDSGSYILAAASQKKVVGEPLRANRLFWAFALCLLPFSLMLVGGERALEVLKT
Newman FLFLATTFDSGSYILAAASQKKVVGEPLRANRLFWAFALCLLPFSLMLVGGERALEVLKT
USA300_FPR3757 FLFLATTFDSGSYILAAASQKKVVGEPLRANRLFWAFALCLLPFSLMLVGGERALEVLKT
************************************************************
COL ASILASVPLIVIFIFMMISFLIILGRDRIKLETRAEKLKEVERRSLRIVQVSEEEQDDNL
N315 ASILASVPLIVIFIFMMISFLIILGRDRIKLETRAEKLKEVERRSLRIVQVSEEEQDDNL
NCTC8325 ASILASVPLIVIFIFMMISFLIILGRDRIKLETRAEKLKEVERRSLRIVQVSEEEQDDNL
Newman ASILASVPLIVIFIFMMISFLIILGRDRIKLETRAEKLKEVERRSLRIVQVSEEEQDDNL
USA300_FPR3757 ASILASVPLIVIFIFMMISFLIILGRDRIKLETRAEKLKEVERRSLRIVQVSEEEQDDNL
************************************************************