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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006197000
- symbol?: cidB
- synonym:
- description?: holin-like protein CidB
- holin-like protein CidB
- LrgB family protein
- LrgB-like protein
- CidA-associated membrane protein CidB
- lrgB-like family protein
- putative murein hydrolase subunit LrgB_1
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6260364..6261053
- synteny block?: BlockID0049210
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2476 (cidB)
08BA02176:
C248_2597
11819-97:
MS7_2545 (cidB)
6850:
RSAU_002381
71193:
ST398NM01_2590
ECT-R 2:
ECTR2_2392
ED133:
SAOV_2584c
ED98:
SAAV_2606
HO 5096 0412:
SAEMRSA15_24430
JH1:
SaurJH1_2616
JH9:
SaurJH9_2563
JKD6008:
SAA6008_02577 (lrgB_1)
JKD6159:
SAA6159_02436 (lrgB_1)
LGA251:
SARLGA251_23150 (cidB)
M013:
M013TW_2512
MRSA252:
SAR2620
MSHR1132:
SAMSHR1132_23600
MSSA476:
SAS2426
Mu3:
SAHV_2524
Mu50:
SAV2540
MW2:
MW2461
RF122:
SAB2414c
ST398:
SAPIG2590
T0131:
SAT0131_02746 (glpP)
TCH60:
HMPREF0772_10651
TW20:
SATW20_26610 (cidB)
USA300_TCH1516:
USA300HOU_2532
VC40:
SAVC_11575
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNDYVQALLMILLTVVLYYFAKRLQQKYPNPFLNPALIASLGIIFVLLIFGISYNGYMKG
N315 MNDYVQALLMILLTVVLYYFAKRLQQKYPNPFLNPALIASLGIIFVLLIFGISYNGYMKG
NCTC8325 MNDYVQALLMILLTVVLYYFAKRLQQKYPNPFLNPALIASLGIIFVLLIFGISYNGYMKG
Newman MNDYVQALLMILLTVVLYYFAKRLQQKYPNPFLNPALIASLGIIFVLLIFGISYNGYMKG
USA300_FPR3757 MNDYVQALLMILLTVVLYYFAKRLQQKYPNPFLNPALIASLGIIFVLLIFGISYNGYMKG
************************************************************
COL GSWINHILNATVVCLAYPLYKNREKIKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKD
N315 GSWINHILNATVVCLAYPLYKNREKIKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKD
NCTC8325 GSWINHILNATVVCLAYPLYKNREKIKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKD
Newman GSWINHILNATVVCLAYPLYKNREKIKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKD
USA300_FPR3757 GSWINHILNATVVCLAYPLYKNREKIKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKD
************************************************************
COL VIVTLLPRSITAAVGIEVSHELGGTDTMTVLFIITTGLIGSILGSMLLRFGRFESSIAKG
N315 VIVTLLPRSITAAVGIEVSHELGGTDTMTVLFIITTGLIGSILGSMLLRFGRFESSIAKG
NCTC8325 VIVTLLPRSITAAVGIEVSHELGGTDTMTVLFIITTGLIGSILGSMLLRFGRFESSIAKG
Newman VIVTLLPRSITAAVGIEVSHELGGTDTMTVLFIITTGLIGSILGSMLLRFGRFESSIAKG
USA300_FPR3757 VIVTLLPRSITAAVGIEVSHELGGTDTMTVLFIITTGLIGSILGSMLLRFGRFESSIAKG
************************************************************
COL LTYGNASHAFGTAKALEMDIESGAFSSIGMILTAVISSVLIPVLILLFY
N315 LTYGNASHAFGTAKALEMDIESGAFSSIGMILTAVISSVLIPVLILLFY
NCTC8325 LTYGNASHAFGTAKALEMDIESGAFSSIGMILTAVISSVLIPVLILLFY
Newman LTYGNASHAFGTAKALEMDIESGAFSSIGMILTAVISSVLIPVLILLFY
USA300_FPR3757 LTYGNASHAFGTAKALEMDIESGAFSSIGMILTAVISSVLIPVLILLFY
*************************************************