PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006010000
• symbol^?: —
• synonym:
• description^?: ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • ABC transporter ATP-binding protein
  • ABC transporter, ATP-binding protein, putative
  • ATP-binding cassette domain-containing protein
  • methionine ABC transporter ATP-binding protein
  • ABC superfamily ATP binding cassette transporter, ABC protein
  • ABC transporter family protein
  • ATP-binding ABC transporter
  • putative ABC transport system ATP-binding protein
  • YbbL ABC transporter ATP-binding protein
• strand^?: -
• coordinates^?: 6070498..6071160
• synteny block^?: BlockID0047540
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2462
N315:
SA2243
NCTC8325:
SAOUHSC_02754
Newman:
NWMN_2353
USA300_FPR3757:
SAUSA300_2399
04-02981:
SA2981_2391
08BA02176:
C248_2505
11819-97:
MS7_2468
6850:
RSAU_002294
71193:
ST398NM01_2507
ECT-R 2:
ECTR2_2312
ED133:
SAOV_2505c
ED98:
SAAV_2521
HO 5096 0412:
SAEMRSA15_23540
JH1:
SaurJH1_2530
JH9:
SaurJH9_2481
JKD6008:
SAA6008_02496
JKD6159:
SAA6159_02352
LGA251:
SARLGA251_22350
M013:
M013TW_2417
MRSA252:
SAR2544
MSHR1132:
SAMSHR1132_22820
MSSA476:
SAS2346
Mu3:
SAHV_2438
Mu50:
SAV2454
MW2:
MW2378
RF122:
SAB2336c
ST398:
SAPIG2507
T0131:
SAT0131_02654 (rplS)
TCH60:
HMPREF0772_10734
TW20:
SATW20_25830
USA300_TCH1516:
USA300HOU_2444
VC40:
SAVC_11145

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLLEIKDLVYKASDRIILDHISLKVDKGESIAIIGPSGSGKSTFQKQICNLFSPTSGELY
  N315            MLLEIKDLVYKASDRIILDHISLKVDKGESIAIIGPSGSGKSTFQKQICNLISPTSGELY
  NCTC8325        MLLEIKDLVYKASDRIILDHISLKVDKGESIAIIGPSGSGKSTFQKQICNLFSPTSGELY
  Newman          MLLEIKDLVYKASDRIILDHISLKVDKGESIAIIGPSGSGKSTFQKQICNLFSPTSGELY
  USA300_FPR3757  MLLEIKDLVYKASDRIILDHISLKVDKGESIAIIGPSGSGKSTFQKQICNLFSPTSGELY
                  ***************************************************:********
  
  COL             FKGKPYNDYDPEELRQRISYLMQQSDLFGETIEDNMIFPSLARNDKFDRKRAKQLIKDVG
  N315            FKGKPYNDYDPEELRQRISYLMQQSDLFGETIEDNMIFPSLARNDKFDRKRAKQLIKDVG
  NCTC8325        FKGKPYNDYDPEELRQRISYLMQQSDLFGETIEDNMIFPSLARNDKFDRKRAKQLIKDVG
  Newman          FKGKPYNDYDPEELRQRISYLMQQSDLFGETIEDNMIFPSLARNDKFDRKRAKQLIKDVG
  USA300_FPR3757  FKGKPYNDYDPEELRQRISYLMQQSDLFGETIEDNMIFPSLARNDKFDRKRAKQLIKDVG
                  ************************************************************
  
  COL             LGHYQLSSEVENMSGGERQRIAIARQLMYTPDILLLDESTSALDVNNKEKIENIIFKLAD
  N315            LGHYQLSSEVENMSGGERQRIAIARQLMYTPDILLLDESTSALDVNNKEKIENIIFKLVE
  NCTC8325        LGHYQLSSEVENMSGGERQRIAIARQLMYTPDILLLDESTSALDVNNKEKIENIIFKLAD
  Newman          LGHYQLSSEVENMSGGERQRIAIARQLMYTPDILLLDESTSALDVNNKEKIENIIFKLAD
  USA300_FPR3757  LGHYQLSSEVENMSGGERQRIAIARQLMYTPDILLLDESTSALDVNNKEKIENIIFKLAD
                  **********************************************************.:
  
  COL             QGVAIMWITHSDDQSMRHFQKRITIVDGQISNTEELNQHE
  N315            QDVAIMWITHSDDQSMRHFQKRITIVDGKISKVEELNQHE
  NCTC8325        QGVAIMWITHSDDQSMRHFQKRITIVDGQISNTEELNQHE
  Newman          QGVAIMWITHSDDQSMRHFQKRITIVDGQISNTEELNQHE
  USA300_FPR3757  QGVAIMWITHSDDQSMRHFQKRITIVDGQISNTEELNQHE
                  *.**************************:**:.*******