PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005946000
• symbol^?: tcyC
• synonym:
• description^?: amino acid ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • amino acid ABC transporter ATP-binding protein
  • ABC transporter ATP-binding protein
  • amino acid ABC transporter, ATP-binding protein, putative
  • L-cystine import ATP-binding protein tcyC
  • ABC superfamily ATP binding cassette transporter, ABC protein
  • ABC transporter-like protein
  • amino acid ABC transporter, ATP-binding protein
  • L-cystine import ATP-binding protein TcyN
• strand^?: -
• coordinates^?: 6010244..6010975
• synteny block^?: BlockID0046900
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2410
N315:
SA2200
NCTC8325:
SAOUHSC_02697
Newman:
NWMN_2311
USA300_FPR3757:
SAUSA300_2357
04-02981:
SA2981_2349
08BA02176:
C248_2457
11819-97:
MS7_2427 (tcyC)
6850:
RSAU_002250
71193:
ST398NM01_2463
ECT-R 2:
ECTR2_2271
ED133:
SAOV_2458c
ED98:
SAAV_2477
HO 5096 0412:
SAEMRSA15_23110
JH1:
SaurJH1_2485
JH9:
SaurJH9_2437
JKD6008:
SAA6008_02453
JKD6159:
SAA6159_02313
LGA251:
SARLGA251_21940
M013:
M013TW_2373
MRSA252:
SAR2502
MSHR1132:
SAMSHR1132_22400
MSSA476:
SAS2303
Mu3:
SAHV_2396
Mu50:
SAV2412
MW2:
MW2334
RF122:
SAB2292c
ST398:
SAPIG2463
T0131:
SAT0131_02603
TCH60:
HMPREF0772_10775
TW20:
SATW20_25420
USA300_TCH1516:
USA300HOU_2393
VC40:
SAVC_10930

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MIQLTNIHKSFNDVEVIKGIDLSVEQGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYV
  N315            MIQLNNIHKSFNDVEVIKGIDLSVEQGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYV
  NCTC8325        MIQLNNIHKSFNDVEVIKGIDLSVEQGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYV
  Newman          MIQLNNIHKSFNDVEVIKGIDLSVEQGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYV
  USA300_FPR3757  MIQLNNIHKSFNDVEVIKGIDLSVEQGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYV
                  ****.*******************************************************
  
  COL             NGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKDEARGKSLE
  N315            NGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKDEARGKSLE
  NCTC8325        NGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKDEARGKSLE
  Newman          NGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKDEARGKSLE
  USA300_FPR3757  NGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKDEARGKSLE
                  ************************************************************
  
  COL             LLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVI
  N315            LLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVI
  NCTC8325        LLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVI
  Newman          LLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVI
  USA300_FPR3757  LLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVI
                  ************************************************************
  
  COL             KDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEMFNRPKTEELRRFLNVI
  N315            KDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEMFNRPKTEELRRFLNVI
  NCTC8325        KDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEMFNRPKTEELRRFLNVI
  Newman          KDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEMFNRPKTEELRRFLNVI
  USA300_FPR3757  KDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEMFNRPKTEELRRFLNVI
                  ************************************************************
  
  COL             NEE
  N315            NEE
  NCTC8325        NEE
  Newman          NEE
  USA300_FPR3757  NEE
                  ***