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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005770000
- symbol?: —
- synonym:
- description?: octopine dehydrogenase
- octopine dehydrogenase
- dehydrogenase family protein
- NAD/NADP octopine/nopaline dehydrogenase
- NAD/NADP octopine/nopaline dehydrogenase, putative
- NAD/NADP octopine/nopaline dehydrogenase family protein
- D-octopine dehydrogenase
- NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain protein
- NAD-dependent glycerol-3-phosphate dehydrogenase family protein
- Opine dehydrogenase
- putative dehydrogenase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5861098..5862180
- synteny block?: BlockID0045160
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2240
08BA02176:
C248_2341
11819-97:
MS7_2319
6850:
RSAU_002134
71193:
ST398NM01_2352
ECT-R 2:
ECTR2_2161
ED133:
SAOV_2341c
ED98:
SAAV_2363
HO 5096 0412:
SAEMRSA15_21990
JH1:
SaurJH1_2368
JH9:
SaurJH9_2325
JKD6008:
SAA6008_02337
JKD6159:
SAA6159_02205
LGA251:
SARLGA251_20840
M013:
M013TW_2258
MRSA252:
SAR2386
MSHR1132:
SAMSHR1132_21260
MSSA476:
SAS2192
Mu3:
SAHV_2286
Mu50:
SAV2302
MW2:
MW2220
RF122:
SAB2174c
ST398:
SAPIG2352
T0131:
SAT0131_02480
TCH60:
HMPREF0772_10896
TW20:
SATW20_24320
USA300_TCH1516:
USA300HOU_2283
VC40:
SAVC_10365
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKIAIVGSGNGAVTAAVDMVSKGHDVKLYCRNQSISKFQNAIEKGGFDFNNEGDERFVKF
N315 MKIAIVGSGNGAVTAAVDMVSKGHDVKLYCRNQSISKFQNAIEKGGFDFNNEGDERFVKF
NCTC8325 MKIAIVGSGNGAVTAAVDMVSKGHDVKLYCRNQSISKFQNAIEKGGFDFNNEGDERFVKF
Newman MKIAIVGSGNGAVTAAVDMVSKGHDVKLYCRNQSISKFQNAIEKGGFDFNNEGDERFVKF
USA300_FPR3757 MKIAIVGSGNGAVTAAVDMVSKGHDVKLYCRNQSISKFQNAIEKGGFDFNNEGDERFVKF
************************************************************
COL TDISDDMEYVLKDAEIVQVIIPSSYIEYYADVMAEHVTDNQLIFFNMAAAMGSIRFMNVL
N315 TDISDDMEYVLKDAEIVQVIIPSSYIEYYADVMAEHVTDNQLIFFNMAAAMGSIRFMNVL
NCTC8325 TDISDDMEYVLKDAEIVQVIIPSSYIEYYADVMAEHVTDNQLIFFNMAAAMGSIRFMNVL
Newman TDISDDMEYVLKDAEIVQVIIPSSYIEYYADVMAEHVTDNQLIFFNMAAAMGSIRFMNVL
USA300_FPR3757 TDISDDMEYVLKDAEIVQVIIPSSYIEYYADVMAEHVTDNQLIFFNMAAAMGSIRFMNVL
************************************************************
COL EDRHIETKPQLAEANTLTYGTRVDFENAAVDLSLNVRRIFFSTYDRSCLNDCYDKVSSIY
N315 EDRHIETKPQLAEANTLTYGTRVDFENAAVDLSLNVRRIFFSTYDRSCLNDCYDKVSSIY
NCTC8325 EDRHIETKPQLAEANTLTYGTRVDFENAAVDLSLNVRRIFFSTYDRSCLNDCYDKVSSIY
Newman EDRHIETKPQLAEANTLTYGTRVDFENAAVDLSLNVRRIFFSTYDRSCLNDCYDKVSSIY
USA300_FPR3757 EDRHIETKPQLAEANTLTYGTRVDFENAAVDLSLNVRRIFFSTYDRSCLNDCYDKVSSIY
************************************************************
COL DHLVKEESLIKTNLENGNPEVHPGPTLLNVGRIDYAGEFALYKEGITKHTVRLLHAIELE
N315 DHLVKEESLIKTNLENGNPEVHPGPTLLNVGRIDYAGEFALYKEGITKHTVRLLHAIELE
NCTC8325 DHLVKEESLIKTNLENGNPEVHPGPTLLNVGRIDYAGEFALYKEGITKHTVRLLHAIELE
Newman DHLVKEESLIKTNLENGNPEVHPGPTLLNVGRIDYAGEFALYKEGITKHTVRLLHAIELE
USA300_FPR3757 DHLVKEESLIKTNLENGNPEVHPGPTLLNVGRIDYAGEFALYKEGITKHTVRLLHAIELE
************************************************************
COL RLNLGRRLGFELSTAKESRIERGYLERDKEDEPLNRLFNTSPVFSQIPGPNHVESRYLTE
N315 RLNLGRRLGFELSTAKESRIERGYLERDKEDEPLNRLFNTSPVFSQIPGPNHVESRYLTE
NCTC8325 RLNLGRRLGFELSTAKESRIERGYLERDKEDEPLNRLFNTSPVFSQIPGPNHVESRYLTE
Newman RLNLGRRLGFELSTAKESRIERGYLERDKEDEPLNRLFNTSPVFSQIPGPNHVESRYLTE
USA300_FPR3757 RLNLGRRLGFELSTAKESRIERGYLERDKEDEPLNRLFNTSPVFSQIPGPNHVESRYLTE
************************************************************
COL DIAYGLVLWSSLGRVIDVPTPNIDAVIVIASTILERDFFEEGLTVEEIGLDKLDLEKYLK
N315 DIAYGLVLWSSLGRVIDVPTPNIDAVIVIASTILERDFFEEGLTVEEIGLDKLDLEKYLK
NCTC8325 DIAYGLVLWSSLGRVIDVPTPNIDAVIVIASTILERDFFEEGLTVEEIGLDKLDLEKYLK
Newman DIAYGLVLWSSLGRVIDVPTPNIDAVIVIASTILERDFFEEGLTVEEIGLDKLDLEKYLK
USA300_FPR3757 DIAYGLVLWSSLGRVIDVPTPNIDAVIVIASTILERDFFEEGLTVEEIGLDKLDLEKYLK
************************************************************