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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005703000
- symbol?: rpsJ
- synonym:
- description?: 30S ribosomal protein S10
- strand?: -
- coordinates?: 5811059..5811367
- synteny block?: BlockID0044490
- occurrence?: in 97% of 34 strains
rpsJ : 30S ribosomal protein S10 [1]
• two crystal structures are available : 6YEF , 8BH6
Staphylococcal 30S ribosomal protein S10 is also known as "uS10" by the universal ribosomal protein nomenclature harmonization system. [2]
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2189 (rpsJ)
08BA02176:
C248_2287 (rpsJ)
11819-97:
MS7_2271 (rpsJ)
6850:
RSAU_002087 (rpsJ)
71193:
ST398NM01_2304
ECT-R 2:
ECTR2_2113 (rpsJ)
ED133:
SAOV_2288c
ED98:
SAAV_2313 (rpsJ)
HO 5096 0412:
SAEMRSA15_21500 (rpsJ)
JH1:
SaurJH1_2319 (rpsJ)
JH9:
SaurJH9_2278 (rpsJ)
JKD6008:
SAA6008_02288 (rpsJ)
JKD6159:
SAA6159_02158 (rpsJ)
JSNZ:
JSNZ_002215 (rpsJ)
LGA251:
SARLGA251_20370 (rpsJ)
M013:
M013TW_2210
MRSA252:
SAR2336 (rpsJ)
MSHR1132:
SAMSHR1132_20770
MSSA476:
SAS2142 (rpsJ)
Mu3:
SAHV_2235 (rpsJ)
Mu50:
SAV2251 (rpsJ)
MW2:
MW2170 (rpsJ)
RF122:
SAB2123c (rpsJ)
ST398:
SAPIG2304 (rpsJ)
T0131:
SAT0131_02424 (typA)
TCH60:
HMPREF0772_10947 (rpsJ)
TW20:
SATW20_23850 (rpsJ)
USA300_TCH1516:
—
VC40:
SAVC_10125 (rpsJ)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MAKQKIRIRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPTEKSVYTIIRAVHMYKD
N315 MAKQKIRIRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPTEKSVYTIIRAVHKYKD
NCTC8325 MAKQKIRIRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPTEKSVYTIIRAVHKYKD
Newman MAKQKIRIRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPTEKSVYTIIRAVHKYKD
USA300_FPR3757 MAKQKIRIRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPTEKSVYTIIRAVHKYKD
******************************************************** ***
COL SREQFEQRTHKRLIDIVNPTPKTVDALMGLNLPSGVDIEIKL
N315 SREQFEQRTHKRLIDIVNPTPKTVDALMGLNLPSGVDIEIKL
NCTC8325 SREQFEQRTHKRLIDIVNPTPKTVDALMGLNLPSGVDIEIKL
Newman SREQFEQRTHKRLIDIVNPTPKTVDALMGLNLPSGVDIEIKL
USA300_FPR3757 SREQFEQRTHKRLIDIVNPTPKTVDALMGLNLPSGVDIEIKL
******************************************
- ↑ M Angeles Argudín, S Roisin, M Dodémont, C Nonhoff, A Deplano, O Denis
Mutations at the Ribosomal S10 Gene in Clinical Strains of Staphylococcus aureus with Reduced Susceptibility to Tigecycline.
Antimicrob Agents Chemother: 2018, 62(1);
[PubMed:29084741] [WorldCat.org] [DOI] (I e)Kathryn Beabout, Troy G Hammerstrom, Anisha Maria Perez, Bárbara Freitas Magalhães, Amy G Prater, Thomas P Clements, Cesar A Arias, Gerda Saxer, Yousif Shamoo
The ribosomal S10 protein is a general target for decreased tigecycline susceptibility.
Antimicrob Agents Chemother: 2015, 59(9);5561-6
[PubMed:26124155] [WorldCat.org] [DOI] (I p)Alexander Golubev, Bulat Fatkhullin, Iskander Khusainov, Lasse Jenner, Azat Gabdulkhakov, Shamil Validov, Gulnara Yusupova, Marat Yusupov, Konstantin Usachev
Cryo-EM structure of the ribosome functional complex of the human pathogen Staphylococcus aureus at 3.2 Å resolution.
FEBS Lett: 2020, 594(21);3551-3567
[PubMed:32852796] [WorldCat.org] [DOI] (I p) - ↑ Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton, Michael A McAlear, Peter B Moore, Harry F Noller, Joaquin Ortega, Vikram Govind Panse, V Ramakrishnan, Christian M T Spahn, Thomas A Steitz, Marek Tchorzewski, David Tollervey, Alan J Warren, James R Williamson, Daniel Wilson, Ada Yonath, Marat Yusupov
A new system for naming ribosomal proteins.
Curr Opin Struct Biol: 2014, 24;165-9
[PubMed:24524803] [WorldCat.org] [DOI] (I p)