Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN005702000
- symbol?: rplC
- synonym:
- description?: 50S ribosomal protein L3
- 50S ribosomal protein L3
- 50S ribosomal protein L3 (BL3)
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5810369..5811031
- synteny block?: BlockID0044480
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2188 (rplC)
08BA02176:
C248_2286 (rplC)
11819-97:
MS7_2270 (rplC)
6850:
RSAU_002086 (rplC)
71193:
ST398NM01_2303
ECT-R 2:
ECTR2_2112
ED133:
SAOV_2287c
ED98:
SAAV_2312 (rplC)
HO 5096 0412:
SAEMRSA15_21490 (rplC)
JH1:
SaurJH1_2318 (rplC)
JH9:
SaurJH9_2277 (rplC)
JKD6008:
SAA6008_02287 (rplC)
JKD6159:
SAA6159_02157 (rplC)
LGA251:
SARLGA251_20360 (rplC)
M013:
M013TW_2209
MRSA252:
SAR2335 (rplC)
MSHR1132:
SAMSHR1132_20760
MSSA476:
SAS2141 (rplC)
Mu3:
SAHV_2234 (rplC)
Mu50:
SAV2250 (rplC)
MW2:
MW2169 (rplC)
RF122:
SAB2122c (rplC)
ST398:
SAPIG2303 (rplC)
T0131:
SAT0131_02423
TCH60:
HMPREF0772_10948 (rplC)
TW20:
SATW20_23840 (rplC)
USA300_TCH1516:
USA300HOU_p4
VC40:
SAVC_10120 (rplC)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTKGILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYK
N315 MTKGILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYK
NCTC8325 MTKGILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYK
Newman MTKGILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYK
USA300_FPR3757 MTKGILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYK
************************************************************
COL KDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTG
N315 KDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTG
NCTC8325 KDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTG
Newman KDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTG
USA300_FPR3757 KDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTG
************************************************************
COL VSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGGNTVTV
N315 VSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGGNTVTV
NCTC8325 VSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGGNTVTV
Newman VSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGGNTVTV
USA300_FPR3757 VSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGGNTVTV
************************************************************
COL QNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKKGNK
N315 QNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKKGNK
NCTC8325 QNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKKGNK
Newman QNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKKGNK
USA300_FPR3757 QNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKKGNK
****************************************