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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005699000
- symbol?: rplB
- synonym:
- description?: 50S ribosomal protein L2
- strand?: -
- coordinates?: 5808578..5809411
- synteny block?: BlockID0044450
- occurrence?: in 100% of 34 strains
rplB (rap) : 50S ribosomal protein L2 [1]
• a crystal structures is available : 6YEF
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2185 (rplB)
08BA02176:
C248_2283 (rplB)
11819-97:
MS7_2267 (rplB)
6850:
RSAU_002083 (rplB)
71193:
ST398NM01_2300
ECT-R 2:
ECTR2_2109 (rplB)
ED133:
SAOV_2284c
ED98:
SAAV_2309 (rplB)
HO 5096 0412:
SAEMRSA15_21460 (rplB)
JH1:
SaurJH1_2315 (rplB)
JH9:
SaurJH9_2274 (rplB)
JKD6008:
SAA6008_02284 (rplB)
JKD6159:
SAA6159_02154 (rplB)
JSNZ:
JSNZ_002211 (rplB)
LGA251:
SARLGA251_20330 (rplB)
M013:
M013TW_2206
MRSA252:
SAR2332 (rplB)
MSHR1132:
SAMSHR1132_20730
MSSA476:
SAS2138 (rplB)
Mu3:
SAHV_2231 (rplB)
Mu50:
SAV2247 (rplB)
MW2:
MW2166 (rplB)
RF122:
SAB2119c (rplB)
ST398:
SAPIG2300 (rplB)
T0131:
SAT0131_02420
TCH60:
HMPREF0772_10951 (rplB)
TW20:
SATW20_23810 (rplB)
USA300_TCH1516:
USA300HOU_2805
VC40:
SAVC_10105 (rplB)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MAIKKYKPITNGRRNMTSLDFAEITKTTPEKSLLKPLPKKAGRNNQGKLTVRHHGGGHKR
N315 MAIKKYKPITNGRRNMTSLDFAEITKTTPEKSLLKPLPKKAGRNNQGKLTVRHHGGGHKR
NCTC8325 MAIKKYKPITNGRRNMTSLDFAEITKTTPEKSLLKPLPKKAGRNNQGKLTVRHHGGGHKR
Newman MAIKKYKPITNGRRNMTSLDFAEITKTTPEKSLLKPLPKKAGRNNQGKLTVRHHGGGHKR
USA300_FPR3757 MAIKKYKPITNGRRNMTSLDFAEITKTTPEKSLLKPLPKKAGRNNQGKLTVRHHGGGHKR
************************************************************
COL QYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADGEKRYIIAPKGLEVGQIVESGA
N315 QYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADGEKRYIIAPKGLEVGQIVESGA
NCTC8325 QYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADGEKRYIIAPKGLEVGQIVESGA
Newman QYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADGEKRYIIAPKGLEVGQIVESGA
USA300_FPR3757 QYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADGEKRYIIAPKGLEVGQIVESGA
************************************************************
COL EADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVLGKEGKYVLIRLRSGE
N315 EADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVLGKEGKYVLIRLRSGE
NCTC8325 EADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVLGKEGKYVLIRLRSGE
Newman EADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVLGKEGKYVLIRLRSGE
USA300_FPR3757 EADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVLGKEGKYVLIRLRSGE
************************************************************
COL VRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAP
N315 VRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAP
NCTC8325 VRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAP
Newman VRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAP
USA300_FPR3757 VRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAP
************************************************************
COL IGRPSPMSPWGKPTLGKKTRRGKKSSDKLIVRGRKKK
N315 IGRPSPMSPWGKPTLGKKTRRGKKSSDKLIVRGRKKK
NCTC8325 IGRPSPMSPWGKPTLGKKTRRGKKSSDKLIVRGRKKK
Newman IGRPSPMSPWGKPTLGKKTRRGKKSSDKLIVRGRKKK
USA300_FPR3757 IGRPSPMSPWGKPTLGKKTRRGKKSSDKLIVRGRKKK
*************************************
- ↑ Moshe Korem, Abhineet S Sheoran, Yael Gov, Saul Tzipori, Ilya Borovok, Naomi Balaban
Characterization of RAP, a quorum sensing activator of Staphylococcus aureus.
FEMS Microbiol Lett: 2003, 223(2);167-75
[PubMed:12829282] [WorldCat.org] [DOI] (P p)Alexander Golubev, Bulat Fatkhullin, Iskander Khusainov, Lasse Jenner, Azat Gabdulkhakov, Shamil Validov, Gulnara Yusupova, Marat Yusupov, Konstantin Usachev
Cryo-EM structure of the ribosome functional complex of the human pathogen Staphylococcus aureus at 3.2 Å resolution.
FEBS Lett: 2020, 594(21);3551-3567
[PubMed:32852796] [WorldCat.org] [DOI] (I p)