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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005696000
- symbol?: rpsC
- synonym:
- description?: 30S ribosomal protein S3
- strand?: -
- coordinates?: 5807174..5807827
- synteny block?: BlockID0044420
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2182 (rpsC)
08BA02176:
C248_2280 (rpsC)
11819-97:
MS7_2264 (rpsC)
6850:
RSAU_002080 (rpsC)
71193:
ST398NM01_2297
ECT-R 2:
ECTR2_2106 (rpsC)
ED133:
SAOV_2281c
ED98:
SAAV_2306 (rpsC)
HO 5096 0412:
SAEMRSA15_21430 (rpsC)
JH1:
SaurJH1_2312 (rpsC)
JH9:
SaurJH9_2271 (rpsC)
JKD6008:
SAA6008_02281 (rpsC)
JKD6159:
SAA6159_02151 (rpsC)
LGA251:
SARLGA251_20300 (rpsC)
M013:
M013TW_2203
MRSA252:
SAR2329 (rpsC)
MSHR1132:
SAMSHR1132_20700
MSSA476:
SAS2135 (rpsC)
Mu3:
SAHV_2228 (rpsC)
Mu50:
SAV2244 (rpsC)
MW2:
MW2163 (rpsC)
RF122:
SAB2116c (rpsC)
ST398:
SAPIG2297 (rpsC)
T0131:
SAT0131_02417
TCH60:
HMPREF0772_10954 (rpsC)
TW20:
SATW20_23780 (rpsC)
USA300_TCH1516:
USA300HOU_p2
VC40:
SAVC_10090 (rpsC)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MGQKINPIGLRVGIIRDWEAKWYAEKDFASLLHEDLKIRKFIDNELKEASVSHVEIERAA
N315 MGQKINPIGLRVGIIRDWEAKWYAEKDFASLLHEDLKIRKFIDNELKEASVSHVEIERAA
NCTC8325 MGQKINPIGLRVGIIRDWEAKWYAEKDFASLLHEDLKIRKFIDNELKEASVSHVEIERAA
Newman MGQKINPIGLRVGIIRDWEAKWYAEKDFASLLHEDLKIRKFIDNELKEASVSHVEIERAA
USA300_FPR3757 MGQKINPIGLRVGIIRDWEAKWYAEKDFASLLHEDLKIRKFIDNELKEASVSHVEIERAA
************************************************************
COL NRINIAIHTGKPGMVIGKGGSEIEKLRNKLNALTDKKVHINVIEIKKVDLDARLVAENIA
N315 NRINIAIHTGKPGMVIGKGGSEIEKLRNKLNALTDKKVHINVIEIKKVDLDARLVAENIA
NCTC8325 NRINIAIHTGKPGMVIGKGGSEIEKLRNKLNALTDKKVHINVIEIKKVDLDARLVAENIA
Newman NRINIAIHTGKPGMVIGKGGSEIEKLRNKLNALTDKKVHINVIEIKKVDLDARLVAENIA
USA300_FPR3757 NRINIAIHTGKPGMVIGKGGSEIEKLRNKLNALTDKKVHINVIEIKKVDLDARLVAENIA
************************************************************
COL RQLENRASFRRVQKQAITRAMKLGAKGIKTQISGRLGGADIARAEQYSEGTVPLHTLRAD
N315 RQLENRASFRRVQKQAITRAMKLGAKGIKTQVSGRLGGADIARAEQYSEGTVPLHTLRAD
NCTC8325 RQLENRASFRRVQKQAITRAMKLGAKGIKTQVSGRLGGADIARAEQYSEGTVPLHTLRAD
Newman RQLENRASFRRVQKQAITRAMKLGAKGIKTQVSGRLGGADIARAEQYSEGTVPLHTLRAD
USA300_FPR3757 RQLENRASFRRVQKQAITRAMKLGAKGIKTQVSGRLGGADIARAEQYSEGTVPLHTLRAD
*******************************:****************************
COL IDYAHAEADTTYGKLGVKVWIYRGEVLPTKNTSGGGK
N315 IDYAHAEADTTYGKLGVKVWIYRGEVLPTKNTSGGGK
NCTC8325 IDYAHAEADTTYGKLGVKVWIYRGEVLPTKNTSGGGK
Newman IDYAHAEADTTYGKLGVKVWIYRGEVLPTKNTSGGGK
USA300_FPR3757 IDYAHAEADTTYGKLGVKVWIYRGEVLPTKNTSGGGK
*************************************