PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005695000
• symbol^?: rplP
• synonym:
• description^?: 50S ribosomal protein L16

  descriptions from strain specific annotations:

  • 50S ribosomal protein L16
  • 50S ribosomal protein L16p (L10e)
• strand^?: -
• coordinates^?: 5806737..5807171
• synteny block^?: BlockID0044410
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2232 (rplP)
N315:
SA2040 (rplP)
NCTC8325:
SAOUHSC_02505 (rplP)
Newman:
NWMN_2145 (rplP)
USA300_FPR3757:
SAUSA300_2197 (rplP)
04-02981:
SA2981_2181 (rplP)
08BA02176:
C248_2279 (rplP)
11819-97:
MS7_2263 (rplP)
6850:
RSAU_002079 (rplP)
71193:
ST398NM01_2296
ECT-R 2:
ECTR2_2105 (rplP)
ED133:
SAOV_2280c
ED98:
SAAV_2305 (rplP)
HO 5096 0412:
SAEMRSA15_21420 (rplP)
JH1:
SaurJH1_2311 (rplP)
JH9:
SaurJH9_2270 (rplP)
JKD6008:
SAA6008_02280 (rplP)
JKD6159:
SAA6159_02150 (rplP)
LGA251:
SARLGA251_20290 (rplP)
M013:
M013TW_2202
MRSA252:
SAR2328 (rplP)
MSHR1132:
SAMSHR1132_20690
MSSA476:
SAS2134 (rplP)
Mu3:
SAHV_2227 (rplP)
Mu50:
SAV2243 (rplP)
MW2:
MW2162 (rplP)
RF122:
SAB2115c (rplP)
ST398:
SAPIG2296 (rplP)
T0131:
SAT0131_02416
TCH60:
HMPREF0772_10955 (rplP)
TW20:
SATW20_23770 (rplP)
USA300_TCH1516:
USA300HOU_p1
VC40:
SAVC_10085 (rplP)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLLPKRVKYRRQHRPKTTGRSKGGNYVTFGEFGLQATTTSWITSRQIESARIAMTRYMKR
  N315            MLLPKRVKYRRQHRPKTTGRSKGGNYVTFGEFGLQATTTSWITSRQIESARIAMTRYMKR
  NCTC8325        MLLPKRVKYRRQHRPKTTGRSKGGNYVTFGEFGLQATTTSWITSRQIESARIAMTRYMKR
  Newman          MLLPKRVKYRRQHRPKTTGRSKGGNYVTFGEFGLQATTTSWITSRQIESARIAMTRYMKR
  USA300_FPR3757  MLLPKRVKYRRQHRPKTTGRSKGGNYVTFGEFGLQATTTSWITSRQIESARIAMTRYMKR
                  ************************************************************
  
  COL             GGKVWIKIFPHTPYTKKPLEVRMGAGKGAVEGWIAVVKPGRILFEVAGVSEEVAREALRL
  N315            GGKVWIKIFPHTPYTKKPLEVRMGAGKGAVEGWIAVVKPGRILFEVAGVSEEVAREALRL
  NCTC8325        GGKVWIKIFPHTPYTKKPLEVRMGAGKGAVEGWIAVVKPGRILFEVAGVSEEVAREALRL
  Newman          GGKVWIKIFPHTPYTKKPLEVRMGAGKGAVEGWIAVVKPGRILFEVAGVSEEVAREALRL
  USA300_FPR3757  GGKVWIKIFPHTPYTKKPLEVRMGAGKGAVEGWIAVVKPGRILFEVAGVSEEVAREALRL
                  ************************************************************
  
  COL             ASHKLPVKTKFVKREELGGETNES
  N315            ASHKLPVKTKFVKREELGGETNES
  NCTC8325        ASHKLPVKTKFVKREELGGETNES
  Newman          ASHKLPVKTKFVKREELGGETNES
  USA300_FPR3757  ASHKLPVKTKFVKREELGGETNES
                  ************************