PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005691000
• symbol^?: rplX
• synonym:
• description^?: 50S ribosomal protein L24

  descriptions from strain specific annotations:

  • 50S ribosomal protein L24
  • 50S ribosomal protein L24p (L26e)
• strand^?: -
• coordinates^?: 5805498..5805815
• synteny block^?: BlockID0044370
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2228 (rplX)
N315:
SA2036 (rplX)
NCTC8325:
SAOUHSC_02501 (rplX)
Newman:
NWMN_2141 (rplX)
USA300_FPR3757:
SAUSA300_2193 (rplX)
04-02981:
SA2981_2177 (rplX)
08BA02176:
C248_2275 (rplX)
11819-97:
MS7_2259 (rplX)
6850:
RSAU_002075 (rplX)
71193:
ST398NM01_2292
ECT-R 2:
ECTR2_2101 (rplX)
ED133:
SAOV_2276c
ED98:
SAAV_2301 (rplX)
HO 5096 0412:
SAEMRSA15_21380 (rplX)
JH1:
SaurJH1_2307 (rplX)
JH9:
SaurJH9_2266 (rplX)
JKD6008:
SAA6008_02276 (rplX)
JKD6159:
SAA6159_02146 (rplX)
LGA251:
SARLGA251_20250 (rplX)
M013:
M013TW_2198
MRSA252:
SAR2324 (rplX)
MSHR1132:
SAMSHR1132_20650
MSSA476:
SAS2130 (rplX)
Mu3:
SAHV_2223 (rplX)
Mu50:
SAV2239 (rplX)
MW2:
MW2158 (rplX)
RF122:
SAB2111c (rplX)
ST398:
SAPIG2292 (rplX)
T0131:
SAT0131_02412
TCH60:
HMPREF0772_10959 (rplX)
TW20:
SATW20_23730 (rplX)
USA300_TCH1516:
USA300HOU_2230 (rplX)
VC40:
SAVC_10065 (rplX)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETE
  N315            MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETE
  NCTC8325        MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETE
  Newman          MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETE
  USA300_FPR3757  MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETE
                  ************************************************************
  
  COL             AAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIKSNN
  N315            AAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIKSNN
  NCTC8325        AAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIKSNN
  Newman          AAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIKSNN
  USA300_FPR3757  AAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIKSNN
                  *********************************************