PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005688000
• symbol^?: rpsH
• synonym:
• description^?: 30S ribosomal protein S8

  descriptions from strain specific annotations:

  • 30S ribosomal protein S8
  • 30S ribosomal protein S8 (BS8)
• strand^?: -
• coordinates^?: 5804294..5804692
• synteny block^?: BlockID0044340
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2225 (rpsH)
N315:
SA2034 (rpsH)
NCTC8325:
SAOUHSC_02498 (rpsH)
Newman:
NWMN_2138 (rpsH)
USA300_FPR3757:
SAUSA300_2190 (rpsH)
04-02981:
SA2981_2174 (rpsH)
08BA02176:
C248_2272 (rpsH)
11819-97:
MS7_2256 (rpsH)
6850:
RSAU_002072 (rpsH)
71193:
ST398NM01_2289
ECT-R 2:
ECTR2_2098
ED133:
SAOV_2273c
ED98:
SAAV_2298 (rpsH)
HO 5096 0412:
SAEMRSA15_21350 (rpsH)
JH1:
SaurJH1_2304 (rpsH)
JH9:
SaurJH9_2263 (rpsH)
JKD6008:
SAA6008_02273 (rpsH)
JKD6159:
SAA6159_02143 (rpsH)
LGA251:
SARLGA251_20220 (rpsH)
M013:
M013TW_2196
MRSA252:
SAR2321 (rpsH)
MSHR1132:
SAMSHR1132_20620
MSSA476:
SAS2127 (rpsH)
Mu3:
SAHV_2220 (rpsH)
Mu50:
SAV2236 (rpsH)
MW2:
MW2155 (rpsH)
RF122:
SAB2108c (rpsH)
ST398:
SAPIG2289 (rpsH)
T0131:
SAT0131_02409
TCH60:
HMPREF0772_10962 (rpsH)
TW20:
SATW20_23700 (rpsH)
USA300_TCH1516:
USA300HOU_2227 (rpsH)
VC40:
SAVC_10050 (rpsH)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTMTDPIADMLTRVRNANMVRHEKLELPASNIKKEIAEILKSEGFIKNVEYVEDDKQGVL
  N315            MTMTDPIADMLTRVRNANMVRHEKLELPASNIKKEIAEILKSEGFIKNVEYVEDDKQGVL
  NCTC8325        MTMTDPIADMLTRVRNANMVRHEKLELPASNIKKEIAEILKSEGFIKNVEYVEDDKQGVL
  Newman          MTMTDPIADMLTRVRNANMVRHEKLELPASNIKKEIAEILKSEGFIKNVEYVEDDKQGVL
  USA300_FPR3757  MTMTDPIADMLTRVRNANMVRHEKLELPASNIKKEIAEILKSEGFIKNVEYVEDDKQGVL
                  ************************************************************
  
  COL             RLFLKYGQNDERVITGLKRISKPGLRVYAKASEMPKVLNGLGIALVSTSEGVITDKEARK
  N315            RLFLKYGQNDERVITGLKRISKPGLRVYAKASEMPKVLNGLGIALVSTSEGVITDKEARK
  NCTC8325        RLFLKYGQNDERVITGLKRISKPGLRVYAKASEMPKVLNGLGIALVSTSEGVITDKEARK
  Newman          RLFLKYGQNDERVITGLKRISKPGLRVYAKASEMPKVLNGLGIALVSTSEGVITDKEARK
  USA300_FPR3757  RLFLKYGQNDERVITGLKRISKPGLRVYAKASEMPKVLNGLGIALVSTSEGVITDKEARK
                  ************************************************************
  
  COL             RNVGGEIIAYVW
  N315            RNVGGEIIAYVW
  NCTC8325        RNVGGEIIAYVW
  Newman          RNVGGEIIAYVW
  USA300_FPR3757  RNVGGEIIAYVW
                  ************