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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005687000
- symbol?: rplF
- synonym:
- description?: 50S ribosomal protein L6
- strand?: -
- coordinates?: 5803733..5804269
- synteny block?: BlockID0044330
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2173 (rplF)
08BA02176:
C248_2271 (rplF)
11819-97:
MS7_2255 (rplF)
6850:
RSAU_002071 (rplF)
71193:
ST398NM01_2288
ECT-R 2:
ECTR2_2097
ED133:
SAOV_2272c
ED98:
SAAV_2297 (rplF)
HO 5096 0412:
SAEMRSA15_21340 (rplF)
JH1:
SaurJH1_2303 (rplF)
JH9:
SaurJH9_2262 (rplF)
JKD6008:
SAA6008_02272 (rplF)
JKD6159:
SAA6159_02142 (rplF)
LGA251:
SARLGA251_20210 (rplF)
M013:
M013TW_2195
MRSA252:
SAR2320 (rplF)
MSHR1132:
SAMSHR1132_20610
MSSA476:
SAS2126 (rplF)
Mu3:
SAHV_2219 (rplF)
Mu50:
SAV2235 (rplF)
MW2:
MW2154 (rplF)
RF122:
SAB2107c (rplF)
ST398:
SAPIG2288
T0131:
SAT0131_02408
TCH60:
HMPREF0772_10963 (rplF)
TW20:
SATW20_23690 (rplF)
USA300_TCH1516:
USA300HOU_2226 (rplF)
VC40:
SAVC_10045 (rplF)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSRVGKKIIDIPSDVTVTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKE
N315 MSRVGKKIIDIPSDVTVTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKE
NCTC8325 MSRVGKKIIDIPSDVTVTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKE
Newman MSRVGKKIIDIPSDVTVTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKE
USA300_FPR3757 MSRVGKKIIDIPSDVTVTFDGNHVTVKGPKGELSRTLNERMTFKQEENTIEVVRPSDSKE
************************************************************
COL DRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEEN
N315 DRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEEN
NCTC8325 DRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEEN
Newman DRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEEN
USA300_FPR3757 DRTNHGTTRALLNNMVQGVSQGYVKVLELVGVGYRAQMQGKDLILNVGYSHPVEIKAEEN
************************************************************
COL ITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKTGK
N315 ITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKTGK
NCTC8325 ITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKTGK
Newman ITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKTGK
USA300_FPR3757 ITFSVEKNTVVKVEGISKEQVGALASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKTGK
**********************************************************