PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005675000
• symbol^?: rplQ
• synonym:
• description^?: 50S ribosomal protein L17
• strand^?: -
• coordinates^?: 5797398..5797766
• synteny block^?: BlockID0044210
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2212 (rplQ)
N315:
SA2022 (rplQ)
NCTC8325:
SAOUHSC_02484 (rplQ)
Newman:
NWMN_2125 (rplQ)
USA300_FPR3757:
SAUSA300_2177 (rplQ)
04-02981:
SA2981_2161 (rplQ)
08BA02176:
C248_2259 (rplQ)
11819-97:
MS7_2243 (rplQ)
6850:
RSAU_002059 (rplQ)
71193:
ST398NM01_2276
ECT-R 2:
ECTR2_2085 (rplQ)
ED133:
SAOV_2261c
ED98:
SAAV_2285 (rplQ)
HO 5096 0412:
SAEMRSA15_21220 (rplQ)
JH1:
SaurJH1_2291 (rplQ)
JH9:
SaurJH9_2250 (rplQ)
JKD6008:
SAA6008_02260 (rplQ)
JKD6159:
SAA6159_02130 (rplQ)
LGA251:
SARLGA251_20090 (rplQ)
M013:
M013TW_2183
MRSA252:
SAR2308 (rplQ)
MSHR1132:
SAMSHR1132_20490
MSSA476:
SAS2114 (rplQ)
Mu3:
SAHV_2207 (rplQ)
Mu50:
SAV2223 (rplQ)
MW2:
MW2142 (rplQ)
RF122:
SAB2096c (rplQ)
ST398:
SAPIG2276 (rplQ)
T0131:
SAT0131_02396
TCH60:
HMPREF0772_10975 (rplQ)
TW20:
SATW20_23570 (rplQ)
USA300_TCH1516:
USA300HOU_2214 (rplQ)
VC40:
SAVC_09985 (rplQ)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRR
  N315            MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRR
  NCTC8325        MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRR
  Newman          MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRR
  USA300_FPR3757  MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRR
                  ************************************************************
  
  COL             NAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIE
  N315            NAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIE
  NCTC8325        NAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIE
  Newman          NAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIE
  USA300_FPR3757  NAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIE
                  ************************************************************
  
  COL             LV
  N315            LV
  NCTC8325        LV
  Newman          LV
  USA300_FPR3757  LV
                  **