PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005634000
• symbol^?: rpsI
• synonym:
• description^?: 30S ribosomal protein S9

  descriptions from strain specific annotations:

  • 30S ribosomal protein S9
  • 30S ribosomal protein S9 (BS10)
• strand^?: -
• coordinates^?: 5765057..5791126
• synteny block^?: BlockID0043870
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2206 (rpsI)
N315:
SA2016 (rpsI)
NCTC8325:
SAOUHSC_02477 (rpsI)
Newman:
NWMN_2119 (rpsI)
USA300_FPR3757:
SAUSA300_2171 (rpsI)
04-02981:
SA2981_2155 (rpsI)
08BA02176:
C248_2253 (rpsI)
11819-97:
MS7_2237 (rpsI)
6850:
RSAU_002053 (rpsI)
71193:
ST398NM01_2270
ECT-R 2:
ECTR2_2079
ED133:
SAOV_2255c
ED98:
SAAV_2278 (rpsI)
HO 5096 0412:
SAEMRSA15_21160 (rpsI)
JH1:
SaurJH1_2285 (rpsI)
JH9:
SaurJH9_2244 (rpsI)
JKD6008:
SAA6008_02254 (rpsI)
JKD6159:
SAA6159_02124 (rpsI)
LGA251:
SARLGA251_20030 (rpsI)
M013:
M013TW_2177
MRSA252:
SAR2300 (rpsI)
MSHR1132:
SAMSHR1132_20430
MSSA476:
SAS2108 (rpsI)
Mu3:
SAHV_2201 (rpsI)
Mu50:
SAV2217 (rpsI)
MW2:
MW2136 (rpsI)
RF122:
SAB2090c (rpsI)
ST398:
SAPIG2270 (rpsI)
T0131:
SAT0131_02389
TCH60:
HMPREF0772_10981 (rpsI)
TW20:
SATW20_23510 (rpsI)
USA300_TCH1516:
USA300HOU_2208 (rpsI)
VC40:
SAVC_09955 (rpsI)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETK
  N315            --MAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETK
  NCTC8325        MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETK
  Newman          --MAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETK
  USA300_FPR3757  MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETK
                    :*********************************************************
  
  COL             GNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGL
  N315            GNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGL
  NCTC8325        GNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGL
  Newman          GNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGL
  USA300_FPR3757  GNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGL
                  ************************************************************
  
  COL             KAARRSPQFSKR
  N315            KAARRSPQFSKR
  NCTC8325        KAARRSPQFSKR
  Newman          KAARRSPQFSKR
  USA300_FPR3757  KAARRSPQFSKR
                  ************