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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005625000
- symbol?: budB
- synonym:
- description?: acetolactate synthase
- acetolactate synthase
- acetolactate synthase AlsS
- Acetolactate synthase, catabolic
- Acetolactate synthase, large subunit
- alpha-acetolactate synthase
- putative acetolactate synthase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5761216..5762903
- synteny block?: BlockID0043780
- occurrence?: in 100% of 34 strains
alsS (budB) : programmed cell acidification antagonist acetolactate synthase [1]
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2144 (alsS)
08BA02176:
C248_2250
11819-97:
MS7_2235 (alsS)
6850:
RSAU_002050 (budB)
71193:
ST398NM01_2268
ECT-R 2:
ECTR2_2068 (alsS)
ED133:
SAOV_2252c
ED98:
SAAV_2268 (budB)
HO 5096 0412:
SAEMRSA15_21140
JH1:
SaurJH1_2276
JH9:
SaurJH9_2237
JKD6008:
SAA6008_02248 (alsS)
JKD6159:
SAA6159_02119 (alsS)
LGA251:
SARLGA251_20010
M013:
M013TW_2174
MRSA252:
SAR2297
MSHR1132:
SAMSHR1132_20380
MSSA476:
SAS2106
Mu3:
SAHV_2191 (alsS)
Mu50:
SAV2207 (alsS)
MW2:
MW2132 (alsS)
RF122:
SAB2087c
ST398:
SAPIG2268 (alsS)
T0131:
SAT0131_02383 (purQ)
TCH60:
HMPREF0772_10984 (alsS)
TW20:
SATW20_23450
USA300_TCH1516:
USA300HOU_2202 (alsS)
VC40:
SAVC_09925
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 | |
| JSNZ |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTDKKYTAADMVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQ
N315 MTDKKYTAADMVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQ
NCTC8325 MTDKKYTAADMVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQ
Newman MTDKKYTAADMVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQ
USA300_FPR3757 MTDKKYTAADMVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQ
************************************************************
COL GIGRLTGKPGVVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNA
N315 GIGRLTGKPGVVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNA
NCTC8325 GIGRLTGKPGVVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNA
Newman GIGRLTGKPGVVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNA
USA300_FPR3757 GIGRLTGKPGVVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNA
************************************************************
COL ALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQ
N315 ALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQ
NCTC8325 ALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQ
Newman ALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQ
USA300_FPR3757 ALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQ
************************************************************
COL KPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSAEETNAIRKLVERTNLPVVETFQGA
N315 KPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSAEETNAIRKLVERTNLPVVETFQGA
NCTC8325 KTNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSAEETNAIRKLVERTNLPVVETFQGA
Newman KPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSAEETNAIRKLVERTNLPVVETFQGA
USA300_FPR3757 KPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSAEETNAIRKLVERTNLPVVETFQGA
*.**********************************************************
COL GVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELETQIINID
N315 GVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELETQIINID
NCTC8325 GVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELETQIINID
Newman GVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELETQIINID
USA300_FPR3757 GVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELETQIINID
************************************************************
COL EVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKAT
N315 EVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKAT
NCTC8325 EVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKAT
Newman EVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKAT
USA300_FPR3757 EVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKAT
************************************************************
COL HEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVA
N315 HEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVA
NCTC8325 HEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVA
Newman HEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVA
USA300_FPR3757 HEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVA
************************************************************
COL LPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEE
N315 LPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEE
NCTC8325 LPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEE
Newman LPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEE
USA300_FPR3757 LPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEE
************************************************************
COL MKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKD
N315 MKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKD
NCTC8325 MKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKD
Newman MKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKD
USA300_FPR3757 MKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKD
************************************************************
COL NIKLSTNMLPDVFN
N315 NIKLSTNMLPDVFN
NCTC8325 NIKLSTNMLPDVFN
Newman NIKLSTNMLPDVFN
USA300_FPR3757 NIKLSTNMLPDVFN
**************
- ↑ Soo-Jin Yang, Paul M Dunman, Steven J Projan, Kenneth W Bayles
Characterization of the Staphylococcus aureus CidR regulon: elucidation of a novel role for acetoin metabolism in cell death and lysis.
Mol Microbiol: 2006, 60(2);458-68
[PubMed:16573694] [WorldCat.org] [DOI] (P p)Sujata S Chaudhari, Vinai C Thomas, Marat R Sadykov, Jeffrey L Bose, Daniel J Ahn, Matthew C Zimmerman, Kenneth W Bayles
The LysR-type transcriptional regulator, CidR, regulates stationary phase cell death in Staphylococcus aureus.
Mol Microbiol: 2016, 101(6);942-53
[PubMed:27253847] [WorldCat.org] [DOI] (I p)