PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005404000
• symbol^?: glyA
• synonym:
• description^?: serine hydroxymethyltransferase

  descriptions from strain specific annotations:

  • serine hydroxymethyltransferase
  • serine hydroxymethyltransferase, putative
  • glycine hydroxymethyltransferase
  • serine hydroxymethyltransferase (Serine methylase)(SHMT)
• strand^?: -
• coordinates^?: 5564499..5565737
• synteny block^?: BlockID0042000
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2105 (glyA)
N315:
SA1915 (glyA)
NCTC8325:
SAOUHSC_02354 (glyA)
Newman:
NWMN_2017 (glyA)
USA300_FPR3757:
SAUSA300_2067 (glyA)
04-02981:
SA2981_2053 (glyA)
08BA02176:
C248_2127 (glyA)
11819-97:
MS7_2129 (glyA)
6850:
RSAU_001951 (glyA)
71193:
ST398NM01_2155
ECT-R 2:
ECTR2_1969
ED133:
SAOV_2154c
ED98:
SAAV_2168 (glyA)
HO 5096 0412:
SAEMRSA15_20210 (glyA)
JH1:
SaurJH1_2187 (glyA)
JH9:
SaurJH9_2149 (glyA)
JKD6008:
SAA6008_02151 (glyA)
JKD6159:
SAA6159_02027 (glyA)
LGA251:
SARLGA251_19140 (glyA)
M013:
M013TW_2072
MRSA252:
SAR2201 (glyA)
MSHR1132:
SAMSHR1132_19360
MSSA476:
SAS2016 (glyA)
Mu3:
SAHV_2097 (glyA)
Mu50:
SAV2113 (glyA)
MW2:
MW2037 (glyA)
RF122:
SAB1997c (glyA)
ST398:
SAPIG2155 (glyA)
T0131:
SAT0131_02275
TCH60:
HMPREF0772_11078 (glyA)
TW20:
SATW20_22510 (glyA)
USA300_TCH1516:
USA300HOU_2103 (glyA)
VC40:
SAVC_09440 (glyA)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSYITKQDKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRY
  N315            MSYITKQDKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRY
  NCTC8325        MSYITKQDKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRY
  Newman          MSYITKQDKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRY
  USA300_FPR3757  MSYITKQDKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRY
                  ************************************************************
  
  COL             YGGCEFVDVTESIAIDRAKALFGAEHVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHG
  N315            YGGCEFVDVTESIAIDRAKALFGAEHVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHG
  NCTC8325        YGGCEFVDVTESIAIDRAKALFGAEHVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHG
  Newman          YGGCEFVDVTESIAIDRAKALFGAEHVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHG
  USA300_FPR3757  YGGCEFVDVTESIAIDRAKALFGAEHVNVQPHSGSQANMAVYLVALGMGDTVLGMNLSHG
                  ********************************************** *************
  
  COL             GHLTHGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDF
  N315            GHLTHGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDF
  NCTC8325        GHLTHGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDF
  Newman          GHLTHGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDF
  USA300_FPR3757  GHLTHGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDF
                  ************************************************************
  
  COL             KKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE
  N315            KKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE
  NCTC8325        KKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE
  Newman          KKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE
  USA300_FPR3757  KKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE
                  ************************************************************
  
  COL             EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEG
  N315            EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEG
  NCTC8325        EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEG
  Newman          EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEG
  USA300_FPR3757  EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEG
                  ************************************************************
  
  COL             FRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLG
  N315            FRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLG
  NCTC8325        FRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLG
  Newman          FRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLG
  USA300_FPR3757  FRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLG
                  ************************************************************
  
  COL             TPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKERVAKLTAEYPLYQ
  N315            TPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKERVAKLTAEYPLYQ
  NCTC8325        TPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKERVAKLTAEYPLYQ
  Newman          TPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKERVAKLTAEYPLYQ
  USA300_FPR3757  TPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKERVAKLTAEYPLYQ
                  ****************************************************