PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005309000
• symbol^?: leuC
• synonym:
• description^?: 3-isopropylmalate dehydratase large subunit

  descriptions from strain specific annotations:

  • 3-isopropylmalate dehydratase large subunit
  • isopropylmalate isomerase large subunit
  • 3-isopropylmalate dehydratase, large subunit
  • 3-isopropylmalate dehydratase large subunit (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
• strand^?: +
• coordinates^?: 5471312..5472683
• synteny block^?: BlockID0041090
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2048 (leuC)
N315:
SA1864 (leuC)
NCTC8325:
SAOUHSC_02287
Newman:
NWMN_1965 (leuC)
USA300_FPR3757:
SAUSA300_2012 (leuC)
04-02981:
SA2981_2000 (leuC)
08BA02176:
C248_2065 (leuC)
11819-97:
MS7_2071 (leuC)
6850:
RSAU_001892 (leuC)
71193:
ST398NM01_2098
ECT-R 2:
ECTR2_1910 (leuC)
ED133:
SAOV_2096 (leuC)
ED98:
SAAV_2107 (leuC)
HO 5096 0412:
SAEMRSA15_19670 (leuC)
JH1:
SaurJH1_2133
JH9:
SaurJH9_2096
JKD6008:
SAA6008_02097 (leuC)
JKD6159:
SAA6159_01972 (leuC)
LGA251:
SARLGA251_18620 (leuC)
M013:
M013TW_2012
MRSA252:
SAR2146 (leuC)
MSHR1132:
SAMSHR1132_18810 (leuC)
MSSA476:
SAS1964
Mu3:
SAHV_2044 (leuC)
Mu50:
SAV2059 (leuC)
MW2:
MW1983 (leuC)
RF122:
SAB1944 (leuC)
ST398:
SAPIG2098 (leuC)
T0131:
SAT0131_02212
TCH60:
HMPREF0772_11139 (leuC)
TW20:
SATW20_21990 (leuC)
USA300_TCH1516:
USA300HOU_2054 (leuC)
VC40:
SAVC_09175

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MGQTLFDKVWNRHVLYGKLGEPQLLYIDLHLIHEVTSPQAFEGLRLQNRKLRRPDLTFAT
  N315            MGQTLFDKVWNRHVLYGKLGEPQLLYIDLHLIHEVTSPQAFEGLRLQNRKLRRPDLTFAT
  NCTC8325        MGQTLFDKVWNRHVLYGKLGEPQLLYIDLHLIHEVTSPQAFEGLRLQNRKLRRPDLTFAT
  Newman          MGQTLFDKVWNRHVLYGKLGEPQLLYIDLHLIHEVTSPQAFEGLRLQNRKLRRPDLTFAT
  USA300_FPR3757  MGQTLFDKVWNRHVLYGKLGEPQLLYIDLHLIHEVTSPQAFEGLRLQNRKLRRPDLTFAT
                  ************************************************************
  
  COL             LDHNVPTIDIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSDEQGIVHMVGPETGLTQPG
  N315            LDHNVPTIDIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSDEQGIVHMVGPETGLTQPG
  NCTC8325        LDHNVPTIDIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSDEQGIVHMVGPETGLTQPG
  Newman          LDHNVPTIDIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSDEQGIVHMVGPETGLTQPG
  USA300_FPR3757  LDHNVPTIDIFNIKDEIANKQITTLQKNAIDFGVHIFDMGSDEQGIVHMVGPETGLTQPG
                  ************************************************************
  
  COL             KTIVCGDSHTATHGAFGAIAFGIGTSEVEHVFATQTLWQTKPKNLKIDINGTLPTGVYAK
  N315            KTIVCGDSHTATHGAFGAIAFGIGTSEVEHVFATQTLWQTKPKNLKIDINGTLPTGVYAK
  NCTC8325        KTIVCGDSHTATHGAFGAIAFGIGTSEVEHVFATQTLWQTKPKNLKIDINGTLPTGVYAK
  Newman          KTIVCGDSHTATHGAFGAIAFGIGTSEVEHVFATQTLWQTKPKNLKIDINGTLPTGVYAK
  USA300_FPR3757  KTIVCGDSHTATHGAFGAIAFGIGTSEVEHVFATQTLWQTKPKNLKIDINGTLPTGVYAK
                  ************************************************************
  
  COL             DIILHLIKTYGVDFGTGYALEFTGETIKNLSMDGRMTICNMAIEGGAKYGIIQPDDITFE
  N315            DIILHLIKTYGVDFGTGYALEFTGETIKNLSMDGRMTICNMAIEGGAKYGIIQPDDITFE
  NCTC8325        DIILHLIKTYGVDFGTGYALEFTGETIKNLSMDGRMTICNMAIEGGAKYGIIQPDDITFE
  Newman          DIILHLIKTYGVDFGTGYALEFTGETIKNLSMDGRMTICNMAIEGGAKYGIIQPDDITFE
  USA300_FPR3757  DIILHLIKTYGVDFGTGYALEFTGETIKNLSMDGRMTICNMAIEGGAKYGIIQPDDITFE
                  ************************************************************
  
  COL             YVKGRPFADNFAKSVDKWRELYSDDDAIFDRVIELDVSTLEPQVTWGTNPEMGVNFSEPF
  N315            YVKGRPFADNFAKSVDKWRELYSDDDAIFDRVIELDVSTLEPQVTWGTNPEMGVNFSEPF
  NCTC8325        YVKGRPFADNFAKSVDKWRELYSDDDAIFDRVIELDVSTLEPQVTWGTNPEMGVNFSEPF
  Newman          YVKGRPFADNFAKSVDKWRELYSDDDAIFDRVIELDVSTLEPQVTWGTNPEMGVNFSEPF
  USA300_FPR3757  YVKGRPFADNFAKSVDKWRELYSDDDAIFDRVIELDVSTLEPQVTWGTNPEMGVNFSEPF
                  ************************************************************
  
  COL             PEINDINDQRAYDYMGLEPGQKAEDIDLGYVFLGSCTNARLSDLIEASHIVKGNKVHPNI
  N315            PEINDINDQRAYDYMGLEPGQKAEDIDLGYVFLGSCTNARLSDLIEASHIVKGNKVHPNI
  NCTC8325        PEINDINDQRAYDYMGLEPGQKAEDIDLGYVFLGSCTNARLSDLIEASHIVKGNKVHPNI
  Newman          PEINDINDQRAYDYMGLEPGQKAEDIDLGYVFLGSCTNARLSDLIEASHIVKGNKVHPNI
  USA300_FPR3757  PEINDINDQRAYDYMGLEPGQKAEDIDLGYVFLGSCTNARLSDLIEASHIVKGNKVHPNI
                  ************************************************************
  
  COL             TAIVVPGSRTVKKEAEKLGLDTIFKNAGFEWREPGCSMCLGMNPDQVPEGVHCASTSNRN
  N315            TAIVVPGSRTVKKEAEKLGLDTIFKNAGFEWREPGCSMCLGMNPDQVPEGVHCASTSNRN
  NCTC8325        TAIVVPGSRTVKKEAEKLGLDTIFKNAGFEWREPGCSMCLGMNPDQVPEGVHCASTSNRN
  Newman          TAIVVPGSRTVKKEAEKLGLDTIFKNAGFEWREPGCSMCLGMNPDQVPEGVHCASTSNRN
  USA300_FPR3757  TAIVVPGSRTVKKEAEKLGLDTIFKNAGFEWREPGCSMCLGMNPDQVPEGVHCASTSNRN
                  ************************************************************
  
  COL             FEGRQGKGARTHLVSPAMAAAAAIHGKFVDVRKVVV
  N315            FEGRQGKGARTHLVSPAMAAAAAIHGKFVDVRKVVV
  NCTC8325        FEGRQGKGARTHLVSPAMAAAAAIHGKFVDVRKVVV
  Newman          FEGRQGKGARTHLVSPAMAAAAAIHGKFVDVRKVVV
  USA300_FPR3757  FEGRQGKGARTHLVSPAMAAAAAIHGKFVDVRKVVV
                  ************************************