PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005197000
• symbol^?: —
• synonym:
• description^?: tetracenomycin polyketide synthesis O-methyltransferase TcmP

  descriptions from strain specific annotations:

  • tetracenomycin polyketide synthesis O-methyltransferase TcmP
  • pseudogene
  • tetracenomycin polyketide synthesis O-methyltransferase, TcmP
• strand^?: -
• coordinates^?: 5363959..5367269
• synteny block^?: BlockID0040290
• occurrence^?: in 33% of 33 strains

⊟Orthologs

COL:
SACOL2009
N315:
—
NCTC8325:
SAOUHSC_02245
Newman:
NWMN_1930
USA300_FPR3757:
SAUSA300_1977
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_19300
JH1:
—
JH9:
—
JKD6008:
SAA6008_02061
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1927
Mu3:
—
Mu50:
—
MW2:
MW1944
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
SATW20_20040
USA300_TCH1516:
USA300HOU_2016
VC40:
SAVC_08980

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKQLVGIPESMLIPLIARAKEYENEKPIIKDALSKKIFDGLDDMYKNVTCDDMSQIGISI
  NCTC8325        MKQLVGIPESMLIPLIARAKEYENEKPIIKDALSKKIFDGLDDMYKNVTCDDMSQIGISI
  Newman          MKQLVGIPESMLIPLIARAKEYENEKPIIKDALSKKIFDGLDDMYKNVTCDDMSQIGISI
  USA300_FPR3757  MKQLVGIPESMLIPLIARAKEYENEKPIIKDALSKKIFDGLDDMYKNVTCDDMSQIGISI
                  ************************************************************
  
  COL             RTVIIDCVTKRLIKDNKDLIVVNIGCGLDTRFQRFNKEKISWIDLDVPESIEIRKTFFKE
  NCTC8325        RTVIIDCVTKRLIKDNKDLIVVNIGCGLDTRFQRFNKEKISWIDLDVPESIEIRKTFFKE
  Newman          RTVIIDCVTKRLIKDNKDLIVVNIGCGLDTRFQRFNKEKISWIDLDVPESIEIRKTFFKE
  USA300_FPR3757  RTVIIDCVTKRLIKDNKDLIVVNIGCGLDTRFQRFNKEKISWIDLDVPESIEIRKTFFKE
                  ************************************************************
  
  COL             SNSYKMISKSMLDYSWIDDVKNYKFFNSKSDILFIIEGVLMYFDESVMTQLLDTIIKKMG
  NCTC8325        SNSYKMISKSMLDYSWIDDVKNYKFFNSKSDILFIIEGVLMYFDESVMTQLLDTIIKKMG
  Newman          SNSYKMISKSMLDYSWIDDVKNYKFFNSKSDILFIIEGVLMYFDESVMTQLLDTIIKKMG
  USA300_FPR3757  SNSYKMISKSMLDYSWIDDVKNYKFFNSKSNILFIIEGVLMYFDESVMTQLLDTIIKKMG
                  ******************************:*****************************
  
  COL             DHNLTFAIEFCSKTIANNTKRHQSVSKLSSQPVFKYGYNDLKKLNEILPNTIRVIHEYNY
  NCTC8325        DHNLTFAIEFCSKTIANNTKRHQSVSKLSSQPVFKYGYNDLKKLNEILPNTIRVIHEYNY
  Newman          DHNLTFAIEFCSKTIANNTKRHQSVSKLSSQPVFKYGYNDLKKLNEILPNTIRVIHEYNY
  USA300_FPR3757  DHNLTFAIEFCSKTIANNTKRHQSVSKLSSQPVFKYGYNDLKKLNEILPNTIRVIHEYNY
                  ************************************************************
  
  COL             FDYYKNRWGLFGYCRFIPYLKKRLNNKIVLMKYKVPKRQRH
  NCTC8325        FDYYKNRWGLFGYCRFIPYLKKRLNNKIVLMKYKVPKRQRH
  Newman          FDYYKNRWGLFGYCRFIPYLKKRLNNKIVLMKYKVPKRQRH
  USA300_FPR3757  FDYYKNRWGLFGYCRFIPYLKKRLNNKIVLMKYKVPKRQRH
                  *****************************************