PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005132000
• symbol^?: —
• synonym:
• description^?: ATP-dependent helicase

  descriptions from strain specific annotations:

  • ATP-dependent helicase
  • exonuclease family protein
  • phage exonuclease
  • putative exonuclease
  • DNA polymerase III subunit alpha
  • exodeoxyribonuclease
  • Pol III-like ATP dependent helicase, phage associated
• strand^?: +
• coordinates^?: 5269231..5270566
• synteny block^?: BlockID0039840
• occurrence^?: in 27% of 33 strains

⊟Orthologs

COL:
—
N315:
SA1806
NCTC8325:
SAOUHSC_01576
Newman:
NWMN_1922
USA300_FPR3757:
SAUSA300_1970
04-02981:
SA2981_1960
08BA02176:
—
11819-97:
—
6850:
—
71193:
ST398NM01_2958
ECT-R 2:
ECTR2_1869
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR2101
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_2005
VC40:
—

⊟Genome Viewer

N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  N315            MKKYDIAVLDFETMNEHMNSPCEVAVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIP
  NCTC8325        MKKYDIAVLDFETMNEHMNSPCEVAVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIP
  Newman          MKKYDIAVLDFETMNEHMNSPCEVAVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIP
  USA300_FPR3757  MKKYDIAVLDFETMNEHMNSPCEVAVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIP
                  ************************************************************
  
  N315            EDVILKAPKYPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVPNFMYVDSIN
  NCTC8325        EDVILKAPKYPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVPNFMYVDSIN
  Newman          EDVILKAPKYPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVPNFMYVDSIN
  USA300_FPR3757  EDVILKAPKYPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVPNFMYVDSIN
                  ************************************************************
  
  N315            IFRSFHAISSFKLENLCSLYDIDKEKLHSAKFDVLALSKMLISLAKNNQHYSVLKLIHYM
  NCTC8325        IFRSFHAISSFKLENLCSLYDIDKEKLHSAKFDVLALSKMLISLAKNNQHYSVLKLIHYM
  Newman          IFRSFHAISSFKLENLCSLYDIDKEKLHSAKFDVLALSKMLISLAKNNQHYSVLKLIHYM
  USA300_FPR3757  IFRSFHAISSFKLENLCSLYDIDKEKLHSAKFDVLALSKMLISLAKNNQHYSVLKLIHYM
                  ************************************************************
  
  N315            PKQYIRFSKYSNSPTKLFDSGFQKIHMKISEINKIEVESVIPILKDKNVVFTGNFDTEKQ
  NCTC8325        PKQYIRFSKYSNSPTKLFDSGFQKIHMKISEINKIEVESVIPILKDKNVVFTGNFDTEKQ
  Newman          PKQYIRFSKYSNSPTKLFDSGFQKIHMKISEINKIEVESVIPILKDKNVVFTGNFDTEKQ
  USA300_FPR3757  PKQYIRFSKYSNSPTKLFDSGFQKIHMKISEINKIEVESVIPILKDKNVVFTGNFDTEKQ
                  ************************************************************
  
  N315            DLMILTRKKGAYIRSDVTAKTDILVEGVQDDKYKDVNGLVSKQRKAREYVGNGAKIQFLN
  NCTC8325        DLMILTRKKGAYIRSDVTAKTDILVEGVQDDKYKDVNGLVSKQRKAREYVGNGAKIQFLN
  Newman          DLMILTRKKGAYIRSDVTAKTDILVEGVQDDKYKDVNGLVSKQRKAREYVGNGAKIQFLN
  USA300_FPR3757  DLMILTRKKGAYIRSDVTAKTDILVEGVQDDKYKDVNGLVSKQRKAREYVGNGAKIQFLN
                  ************************************************************
  
  N315            EEDLINLIKE
  NCTC8325        EEDLINLIKE
  Newman          EEDLINLIKE
  USA300_FPR3757  EEDLINLIKE
                  **********