PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005020000
• symbol^?: chp
• synonym:
• description^?: chemotaxis-inhibiting protein CHIPS

  descriptions from strain specific annotations:

  • chemotaxis-inhibiting protein CHIPS
  • chemotaxis inhibitory protein
  • Chemotaxis-inhibiting protein CHIPS, phage associated
  • chemotaxis inhibitory protein (CHIPS)
  • chemotaxis inhibitory protein CHIPS
• strand^?: +
• coordinates^?: 5194509..5194958
• synteny block^?: BlockID0039010
• occurrence^?: in 45% of 33 strains

⊟Orthologs

COL:
—
N315:
SA1755
NCTC8325:
SAOUHSC_02169
Newman:
NWMN_1877 (chp)
USA300_FPR3757:
SAUSA300_1920 (chs)
04-02981:
SA2981_1902
08BA02176:
—
11819-97:
—
6850:
RSAU_000619
71193:
ST398NM01_2913
ECT-R 2:
ECTR2_1815
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_18590 (chp)
JH1:
SaurJH1_2035
JH9:
SaurJH9_2000
JKD6008:
—
JKD6159:
SAA6159_01873 (chs)
LGA251:
—
M013:
—
MRSA252:
SAR2036 (chp)
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
HMPREF0772_11197 (chp)
TW20:
—
USA300_TCH1516:
USA300HOU_1947 (chp)
VC40:
—

⊟Genome Viewer

N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  N315            MKKKLATTVLALSFLTAGISTHHHSAKAFTFEPFPTNEEIESNKKMLEKEKAYKESFKNS
  NCTC8325        MKKKLATTVLALSFLTAGISTHHHSAKAFTFEPFPTNEEIESNKKLLEKEKAYKESFKNS
  Newman          MKKKLATTVLALSFLTAGISTHHHSAKAFTFEPFPTNEEIESNKKMLEKEKAYKESFKNS
  USA300_FPR3757  MKKKLATTVLALSFLTAGISTHHHSAKAFTFEPFPTNEEIESNKKMLEKEKAYKESFKNS
                  *********************************************:**************
  
  N315            GLPTTLGKLDERLRNYLEKGTKNTAQFEKMVILTENKGYYTVYLNTPLAEDRKNVELLGK
  NCTC8325        GLPTTLGKLDERLRNYLKKGTKNSAQFEKMVILTENKGYYTVYLNTPLAEDRKNVELLGK
  Newman          GLPTTLGKLDERLRNYLKKGTKNSAQFEKMVILTENKGYYTVYLNTPLAEDRKNVELLGK
  USA300_FPR3757  GLPTTLGKLDERLRNYLKKGTKNSAQFEKMVILTENKGYYTVYLNTPLAEDRKNVELLGK
                  *****************:*****:************************************
  
  N315            MYKTYFFKKGESKSSYVINGPGKTNEYAY
  NCTC8325        MYKTYFFKKGESKSSYVINGPGKTNEYAY
  Newman          MYKTYFFKKGESKSSYVINGPGKTNEYAY
  USA300_FPR3757  MYKTYFFKKGESKSSYVINGPGKTNEYAY
                  *****************************