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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004918000
- symbol?: —
- synonym:
- description?: DNA polymerase III subunit epsilon
- DNA polymerase III subunit epsilon
- exonuclease
- 3'-5' exonuclease
- 3'-5' exonuclease, putative
- exonuclease, RNase T and DNA polymerase III
- DNA-directed DNA polymerase III
- DNA polymerase III alpha chain
- DNA polymerase III polC-type
- DNA polymerase III subunit alpha PolC-type
- exonuclease family protein
- exonuclease RNase T and DNA polymerase III
- putative exonuclease
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5107301..5107855
- synteny block?: BlockID0038240
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1850 (polC)
08BA02176:
C248_1968
11819-97:
MS7_1929
6850:
RSAU_001781
71193:
ST398NM01_1987
ECT-R 2:
ECTR2_1765
ED133:
SAOV_1993
ED98:
SAAV_1960
HO 5096 0412:
SAEMRSA15_18010
JH1:
SaurJH1_1982
JH9:
SaurJH9_1948
JKD6008:
SAA6008_01914
JKD6159:
SAA6159_01825
LGA251:
SARLGA251_17760
M013:
M013TW_1930
MRSA252:
SAR1985
MSHR1132:
SAMSHR1132_17390
MSSA476:
SAS1816
Mu3:
SAHV_1879
Mu50:
SAV1894
MW2:
MW1835
RF122:
SAB1826
ST398:
SAPIG1987
T0131:
SAT0131_02019
TCH60:
HMPREF0772_11249
TW20:
SATW20_18880
USA300_TCH1516:
USA300HOU_1893
VC40:
SAVC_08730
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKIHGIQP
N315 MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQP
NCTC8325 MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKIHGIQP
Newman MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKIHGIQP
USA300_FPR3757 MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKIHGIQP
******************************************************:*****
COL EDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLA
N315 EDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLA
NCTC8325 EDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLA
Newman EDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLA
USA300_FPR3757 EDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLA
************************************************************
COL KRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNL
N315 KRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNL
NCTC8325 KRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNL
Newman KRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNL
USA300_FPR3757 KRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNL
************************************************************
COL KDKG
N315 KDKG
NCTC8325 KDKG
Newman KDKG
USA300_FPR3757 KDKG
****