PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004366000
• symbol^?: —
• synonym:
• description^?: membrane protein

  descriptions from strain specific annotations:

  • membrane protein
  • permease, putative
  • TSUP family transporter
  • sulfite exporter TauE/SafE-like protein
  • membrane spanning protein
  • putative membrane protein YfcA
  • sulfite exporter TauE/SafE family protein
  • transporter
• strand^?: -
• coordinates^?: 4605804..4606244
• synteny block^?: BlockID0033710
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1763
N315:
SA1536
NCTC8325:
SAOUHSC_01823
Newman:
NWMN_1608
USA300_FPR3757:
SAUSA300_1660
04-02981:
SA2981_1672
08BA02176:
C248_1755
11819-97:
MS7_1720
6850:
RSAU_001571
71193:
ST398NM01_1767
ECT-R 2:
ECTR2_1554
ED133:
SAOV_1701
ED98:
SAAV_1724
HO 5096 0412:
SAEMRSA15_16230
JH1:
SaurJH1_1805
JH9:
SaurJH9_1770
JKD6008:
SAA6008_01682
JKD6159:
SAA6159_01638
LGA251:
SARLGA251_16050
M013:
M013TW_1727
MRSA252:
SAR1792
MSHR1132:
SAMSHR1132_15640
MSSA476:
SAS1641
Mu3:
SAHV_1700
Mu50:
SAV1714
MW2:
MW1657
RF122:
SAB1573c
ST398:
SAPIG1767
T0131:
SAT0131_01817 (tagA)
TCH60:
HMPREF0772_11438
TW20:
SATW20_17050
USA300_TCH1516:
USA300HOU_1701
VC40:
SAVC_07780

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MDLNLTMIIIIILFGFIAAFIDSVVGGGGLISTPALLAIGLPPSVALGTNKLASSFGSLT
  N315            MDLNLTMIIIIILFGFIAAFIDSVVGGGGLISTPALLAIGLPPSVALGTNKLASSFGSLT
  NCTC8325        MDLNLTMIIIIILFGFIAAFIDSVVGGGGLISTPALLAIGLPPSVALGTNKLASSFGSLT
  Newman          MDLNLTMIIIIILFGFIAAFIDSVVGGGGLISTPALLAIGLPPSVALGTNKLASSFGSLT
  USA300_FPR3757  MDLNLTMIIIIILFGFIAAFIDSVVGGGGLISTPALLAIGLPPSVALGTNKLASSFGSLT
                  ************************************************************
  
  COL             STIKFIRSGKVDLYVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLK
  N315            SMIKFIRSGKVDLFVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLK
  NCTC8325        STIKFIRSGKVDLYVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLK
  Newman          STIKFIRSGKVDLYVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLK
  USA300_FPR3757  STIKFIRSGKVDLYVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLK
                  * ***********:**********************************************
  
  COL             KDWGNTRTFTQFTFKKAIIFAALFILIGFYDGFVGGGTGSFMLFVLLVFGFDFLSAAGNA
  N315            KDWGNTRTFTQFTFKKAIIFAALFILIGFYDGFVGGGTGSFMLFVLLVFGFDFLSAAGNA
  NCTC8325        KDWGNTRTFTQFTFKKAIIFAALFILIGFYDGFVGGGTGSFMLFVLLVFGFDFLSAAGNA
  Newman          KDWGNTRTFTQFTFKKAIIFAALFILIGFYDGFVGGGTGSFMLFVLLVFGFDFLSAAGNA
  USA300_FPR3757  KDWGNTRTFTQFTFKKAIIFAALFILIGFYDGFVGGGTGSFMLFVLLVFGFDFLSAAGNA
                  ************************************************************
  
  COL             KVLNFASNIGALVLFMVLGQVDYVIGLIMAISMIAGSYAGAHFAIKQGVGYVKVLFIIIT
  N315            KVLNFASNIGALVLFMVLGQVDYVIGLIMAISMIAGSYTGAHFAIKQGVGYVKVLFIIIT
  NCTC8325        KVLNFASNIGALVLFMVLGQVDYVIGLIMAISMIAGSYAGAHFAIKQGVGYVKVLFIIIT
  Newman          KVLNFASNIGALVLFMVLGQVDYVIGLIMAISMIAGSYAGAHFAIKQGVGYVKVLFIIIT
  USA300_FPR3757  KVLNFASNIGALVLFMVLGQVDYVIGLIMAISMIAGSYAGAHFAIKQGVGYVKVLFIIIT
                  **************************************:*********************
  
  COL             AILILKNAFDYIQQFV
  N315            AILILKNAFDYIQQFV
  NCTC8325        AILILKNAFDYIQQFV
  Newman          AILILKNAFDYIQQFV
  USA300_FPR3757  AILILKNAFDYIQQFV
                  ****************