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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004309000
- symbol?: gapB
- synonym:
- description?: glyceraldehyde 3-phosphate dehydrogenase 2
- glyceraldehyde 3-phosphate dehydrogenase 2
- aldehyde dehydrogenase
- glyceraldehyde 3-phosphate dehydrogenase
- type I glyceraldehyde-3-phosphate dehydrogenase
- glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
- NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase
- glyceraldehyde-3-phosphate dehydrogenase, type I
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4548126..4549151
- synteny block?: BlockID0033330
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1646 (gapB)
08BA02176:
C248_1729 (gap2)
11819-97:
MS7_1694
6850:
RSAU_001545 (gapA)
71193:
ST398NM01_1741
ECT-R 2:
ECTR2_1527 (gap)
ED133:
SAOV_1675 (gap_1)
ED98:
SAAV_1677 (gapA2)
HO 5096 0412:
SAEMRSA15_15970 (gap2)
JH1:
SaurJH1_1778
JH9:
SaurJH9_1744
JKD6008:
SAA6008_01654 (gapB)
JKD6159:
SAA6159_01611 (gapB)
LGA251:
SARLGA251_15790 (gap2)
M013:
M013TW_1700
MRSA252:
SAR1766 (gap2)
MSHR1132:
SAMSHR1132_15140
MSSA476:
SAS1615
Mu3:
SAHV_1673 (gapB)
Mu50:
SAV1687 (gapB)
MW2:
MW1630 (gapB)
RF122:
SAB1546c (gap)
ST398:
SAPIG1741 (gap)
T0131:
SAT0131_01789
TCH60:
HMPREF0772_11464 (gap)
TW20:
SATW20_16770 (gap2)
USA300_TCH1516:
USA300HOU_1674 (gapB)
VC40:
SAVC_07640
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSTNIAINGMGRIGRMVLRIALQNKNLNVVAINASYPPETIAHLINYDTTHGKYNLKVEP
N315 MSTNIAINGMGRIGRMVLRIALQNKNLNVVAINASYPPETIAHLINYDTTHGKYNLKVEP
NCTC8325 MSTNIAINGMGRIGRMVLRIALQNKNLNVVAINASYPPETIAHLINYDTTHGKYNLKVEP
Newman MSTNIAINGMGRIGRMVLRIALQNKNLNVVAINASYPPETIAHLINYDTTHGKYNLKVEP
USA300_FPR3757 MSTNIAINGMGRIGRMVLRIALQNKNLNVVAINASYPPETIAHLINYDTTHGKYNLKVEP
************************************************************
COL IENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLT
N315 IENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLT
NCTC8325 IENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLT
Newman IENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLT
USA300_FPR3757 IENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLT
************************************************************
COL GPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVH
N315 GPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVH
NCTC8325 GPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVH
Newman GPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVH
USA300_FPR3757 GPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVH
************************************************************
COL AITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNV
N315 AITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNV
NCTC8325 AITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNV
Newman AITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNV
USA300_FPR3757 AITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNV
************************************************************
COL SLVDLVVDLEKEVTAEEVNQAFENAGLEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVM
N315 SLVDLVVDLEKEVTAEEVNQAFENAGLEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVM
NCTC8325 SLVDLVVDLEKEVTAEEVNQAFENAGLEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVM
Newman SLVDLVVDLEKEVTAEEVNQAFENAGLEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVM
USA300_FPR3757 SLVDLVVDLEKEVTAEEVNQAFENAGLEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVM
************************************************************
COL SGNKVKVIAWYDNEWGYSNRVVDVAEQIGALLTSKETVSAS
N315 SGNKVKVIAWYDNEWGYSNRVVDVAEQIGALLTSKETVSAS
NCTC8325 SGNKVKVIAWYDNEWGYSNRVVDVAEQIGALLTSKETVSAS
Newman SGNKVKVIAWYDNEWGYSNRVVDVAEQIGALLTSKETVSAS
USA300_FPR3757 SGNKVKVIAWYDNEWGYSNRVVDVAEQIGALLTSKETVSAS
*****************************************