PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004290000
• symbol^?: clpX
• synonym:
• description^?: ATP-dependent Clp protease ATP-binding subunit ClpX

  descriptions from strain specific annotations:

  • ATP-dependent Clp protease ATP-binding subunit ClpX
  • ATP-dependent protease ATP-binding subunit ClpX
  • ATP-dependent Clp protease, ATP-binding subunit ClpX
  • ATP-dependent endopeptidase clp ATP-binding subunit
• strand^?: -
• coordinates^?: 4534825..4536087
• synteny block^?: BlockID0033140
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1721 (clpX)
N315:
SA1498 (clpX)
NCTC8325:
SAOUHSC_01778 (clpX)
Newman:
NWMN_1568 (clpX)
USA300_FPR3757:
SAUSA300_1621 (clpX)
04-02981:
SA2981_1634 (clpX)
08BA02176:
C248_1715 (clpX)
11819-97:
MS7_1682 (clpX)
6850:
RSAU_001533 (clpX)
71193:
ST398NM01_1729
ECT-R 2:
ECTR2_1515 (clpX)
ED133:
SAOV_1663 (clpX)
ED98:
SAAV_1662 (clpX)
HO 5096 0412:
SAEMRSA15_15850 (clpX)
JH1:
SaurJH1_1766 (clpX)
JH9:
SaurJH9_1732 (clpX)
JKD6008:
SAA6008_01642 (clpX)
JKD6159:
SAA6159_01599 (clpX)
LGA251:
SARLGA251_15670 (clpX)
M013:
M013TW_1688
MRSA252:
SAR1754 (clpX)
MSHR1132:
SAMSHR1132_15020
MSSA476:
SAS1603 (clpX)
Mu3:
SAHV_1661 (clpX)
Mu50:
SAV1674 (clpX)
MW2:
MW1618 (clpX)
RF122:
SAB1534c (clpX)
ST398:
SAPIG1729 (clpX)
T0131:
SAT0131_01776
TCH60:
HMPREF0772_11476 (clpX)
TW20:
SATW20_16650 (clpX)
USA300_TCH1516:
USA300HOU_1666 (clpX)
VC40:
SAVC_07580 (clpX)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTE
  N315            MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTE
  NCTC8325        MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTE
  Newman          MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTE
  USA300_FPR3757  MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTE
                  ************************************************************
  
  COL             LPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTG
  N315            LPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTG
  NCTC8325        LPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTG
  Newman          LPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTG
  USA300_FPR3757  LPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTG
                  ************************************************************
  
  COL             SGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIY
  N315            SGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIY
  NCTC8325        SGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIY
  Newman          SGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIY
  USA300_FPR3757  SGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIY
                  ************************************************************
  
  COL             VDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
  N315            VDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
  NCTC8325        VDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
  Newman          VDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
  USA300_FPR3757  VDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
                  ************************************************************
  
  COL             ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIG
  N315            ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIG
  NCTC8325        ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIG
  Newman          ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIG
  USA300_FPR3757  ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIG
                  ************************************************************
  
  COL             RVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERK
  N315            RVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERK
  NCTC8325        RVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERK
  Newman          RVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERK
  USA300_FPR3757  RVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERK
                  ************************************************************
  
  COL             TGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEETEPELYDAEGNLINNSKTSA
  N315            TGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEETEPELYDAEGNLINNSKTSA
  NCTC8325        TGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEETEPELYDAEGNLINNSKTSA
  Newman          TGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEETEPELYDAEGNLINNSKTSA
  USA300_FPR3757  TGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEETEPELYDAEGNLINNSKTSA
                  ************************************************************