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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004182000
- symbol?: aroE
- synonym:
- description?: shikimate 5-dehydrogenase
- shikimate 5-dehydrogenase
- shikimate dehydrogenase
- AroDI alpha
- Shikimate 5-dehydrogenase I alpha
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4443866..4444621
- synteny block?: BlockID0032120
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1554 (aroE)
08BA02176:
C248_1638 (aroE)
11819-97:
MS7_1613 (aroE)
6850:
RSAU_001460 (aroE)
71193:
ST398NM01_1661
ECT-R 2:
ECTR2_1445 (aroE)
ED133:
SAOV_1595
ED98:
SAAV_1587 (aroE)
HO 5096 0412:
SAEMRSA15_15150 (aroE)
JH1:
SaurJH1_1688
JH9:
SaurJH9_1653
JKD6008:
SAA6008_01566 (aroE)
JKD6159:
SAA6159_01531 (aroE)
LGA251:
SARLGA251_15010 (aroE)
M013:
M013TW_1610
MRSA252:
SAR1673 (aroE)
MSHR1132:
SAMSHR1132_14350
MSSA476:
SAS1533
Mu3:
SAHV_1583 (aroE)
Mu50:
SAV1596 (aroE)
MW2:
MW1547 (aroE)
RF122:
SAB1468c (aroE)
ST398:
SAPIG1661 (aroE)
T0131:
SAT0131_01691
TCH60:
HMPREF0772_11545 (aroE)
TW20:
SATW20_15920 (aroE)
USA300_TCH1516:
USA300HOU_1597 (aroE)
VC40:
SAVC_07235
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELEGFNIT
N315 MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELDGFNIT
NCTC8325 MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELEGFNIT
Newman MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELEGFNIT
USA300_FPR3757 MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELEGFNIT
******************************************************:*****
COL IPHKERIIPYLDYVDEQAINAGAVNTVLIKDGKWIGYNTDGIGYVKGLHSVYPDLENAYI
N315 IPHKERIIPYLDYVDEQAINAGAVNTVLIKDGKWIGYNTDGIGYVKGLHSVYPDLENAYI
NCTC8325 IPHKERIIPYLDYVDEQAINAGAVNTVLIKDGKWIGYNTDGIGYVKGLHSVYPDLENAYI
Newman IPHKERIIPYLDYVDEQAINAGAVNTVLIKDGKWIGYNTDGIGYVKGLHSVYPDLENAYI
USA300_FPR3757 IPHKERIIPYLDYVDEQAINAGAVNTVLIKDGKWIGYNTDGIGYVKGLHSVYPDLENAYI
************************************************************
COL LILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLNINQISLADAEKYLAEFDIVI
N315 LILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLNINQISLADAEKYLAEFDIVI
NCTC8325 LILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLNINQISLADAEKYLAEFDIVI
Newman LILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLNINQISLADAEKYLAEFDIVI
USA300_FPR3757 LILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLNINQISLADAEKYLAEFDIVI
************************************************************
COL NTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQG
N315 NTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQG
NCTC8325 NTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQG
Newman NTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQG
USA300_FPR3757 NTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQG
************************************************************
COL AESFKIWTNKDADINSMKTAVLQQLKGE
N315 AESFKIWTNKDADINSMKTAVLQQLKGE
NCTC8325 AESFKIWTNKDADINSMKTAVLQQLKGE
Newman AESFKIWTNKDADINSMKTAVLQQLKGE
USA300_FPR3757 AESFKIWTNKDADINSMKTAVLQQLKGE
****************************