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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004160000
- symbol?: rsmE
- synonym:
- description?: 16S rRNA (uracil(1498)-N(3))-methyltransferase
- 16S rRNA (uracil(1498)-N(3))-methyltransferase
- 16S ribosomal RNA methyltransferase RsmE
- 16S ribosomal RNA methyltransferase, putative
- Ribosomal RNA small subunit methyltransferase E
- protein YqeU
- RNA methyltransferase family protein
- RsmE family RNA methyltransferase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4425487..4426149
- synteny block?: BlockID0031900
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1535
08BA02176:
C248_1620
11819-97:
MS7_1594 (rsmE)
6850:
RSAU_001442 (rsmE)
71193:
ST398NM01_1643
ECT-R 2:
ECTR2_1427
ED133:
SAOV_1577
ED98:
SAAV_1569
HO 5096 0412:
SAEMRSA15_14970
JH1:
SaurJH1_1669
JH9:
SaurJH9_1635
JKD6008:
SAA6008_01547 (rsmE)
JKD6159:
SAA6159_01512 (rsmE)
LGA251:
SARLGA251_14830
M013:
M013TW_1592
MRSA252:
SAR1654
MSHR1132:
SAMSHR1132_14170
MSSA476:
SAS1515
Mu3:
SAHV_1564
Mu50:
SAV1577
MW2:
MW1529
RF122:
SAB1449c
ST398:
SAPIG1643
T0131:
SAT0131_01673
TCH60:
HMPREF0772_11563
TW20:
SATW20_15730
USA300_TCH1516:
USA300HOU_1578
VC40:
SAVC_07135
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK
N315 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK
NCTC8325 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK
Newman MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK
USA300_FPR3757 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK
************************************************************
COL IEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE
N315 IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE
NCTC8325 IEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE
Newman IEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE
USA300_FPR3757 IEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE
* **********************************************************
COL AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE
N315 AKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE
NCTC8325 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE
Newman AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE
USA300_FPR3757 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE
***.********************************************************
COL LSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALS
N315 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALS
NCTC8325 LSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALS
Newman LSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALS
USA300_FPR3757 LSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALS
***********:************************************************
COL AISYEKELMG
N315 AISYEKELMG
NCTC8325 AISYEKELMG
Newman AISYEKELMG
USA300_FPR3757 AISYEKELMG
**********