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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004142000
- symbol?: sigA
- synonym:
- description?: RNA polymerase sigma factor RpoD
- RNA polymerase sigma factor RpoD
- RNA polymerase sigma factor SigA
- RNA polymerase sigma factor rpoD (Sigma-A) (Sigma-43)
- DNA-directed RNA polymerase sigma subunit RpoD
- RNA polymerase sigma-70 factor RpoD
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4410173..4411279
- synteny block?: BlockID0031720
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1519 (rpoD)
08BA02176:
C248_1604 (rpoD)
11819-97:
MS7_1578 (rpoD)
6850:
RSAU_001426 (rpoD)
71193:
ST398NM01_1626
ECT-R 2:
ECTR2_1411 (rpoD)
ED133:
SAOV_1561 (rpoD)
ED98:
SAAV_1553 (rpoD)
HO 5096 0412:
SAEMRSA15_14810 (rpoD)
JH1:
SaurJH1_1653
JH9:
SaurJH9_1619
JKD6008:
SAA6008_01530 (rpoD)
JKD6159:
SAA6159_01496 (rpoD)
LGA251:
SARLGA251_14670 (rpoD)
M013:
M013TW_1576
MRSA252:
SAR1638 (rpoD)
MSHR1132:
SAMSHR1132_14010
MSSA476:
SAS1499
Mu3:
SAHV_1548 (sigA)
Mu50:
SAV1561 (sigA)
MW2:
MW1513 (sigA)
RF122:
SAB1433c (rpoD)
ST398:
SAPIG1626
T0131:
SAT0131_01656
TCH60:
HMPREF0772_11579 (rpoD)
TW20:
SATW20_15570 (rpoD)
USA300_TCH1516:
USA300HOU_1563 (rpoD)
VC40:
SAVC_07055
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSDNTVKIKKQTIDPTLTLEDVKKQLIEKGKKEGHLSHEEIAEKLQNFDIDSDQMDDFFD
N315 MSDNTVKIKKQTIDPTLTLEDVKKQLIEKGKKEGHLSHEEIAEKLQNFDIDSDQMDDFFD
NCTC8325 MSDNTVKIKKQTIDPTLTLEDVKKQLIEKGKKEGHLSHEEIAEKLQNFDIDSDQMDDFFD
Newman MSDNTVKIKKQTIDPTLTLEDVKKQLIEKGKKEGHLSHEEIAEKLQNFDIDSDQMDDFFD
USA300_FPR3757 MSDNTVKIKKQTIDPTLTLEDVKKQLIEKGKKEGHLSHEEIAEKLQNFDIDSDQMDDFFD
************************************************************
COL QLNDNDISLVNEKDSSDTDEKLNPSDLSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIEL
N315 QLNDNDISLVNEKDSSDTDEKLNPSDLSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIEL
NCTC8325 QLNDNDISLVNEKDSSDTDEKLNPSDLSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIEL
Newman QLNDNDISLVNEKDSSDTDEKLNPSDLSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIEL
USA300_FPR3757 QLNDNDISLVNEKDSSDTDEKLNPSDLSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIEL
************************************************************
COL AKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKG
N315 AKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKG
NCTC8325 AKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKG
Newman AKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKG
USA300_FPR3757 AKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKG
************************************************************
COL FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIG
N315 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIG
NCTC8325 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIG
Newman FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIG
USA300_FPR3757 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIG
************************************************************
COL EEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQL
N315 EEMDLPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQL
NCTC8325 EEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQL
Newman EEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQL
USA300_FPR3757 EEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQL
************:***********************************************
COL EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS
N315 EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS
NCTC8325 EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS
Newman EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS
USA300_FPR3757 EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS
************************************************************
COL KRLKDFMD
N315 KRLKDFMD
NCTC8325 KRLKDFMD
Newman KRLKDFMD
USA300_FPR3757 KRLKDFMD
********