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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004138000
- symbol?: nfo
- synonym:
- description?: endonuclease IV
- endonuclease IV
- endonuclease
- deoxyribonuclease IV
- endonuclease IV, putative
- apurinic endonuclease (APN1) family protein
- deoxyribonuclease IV (phage-T(4)-induced)
- probable endonuclease 4 (Endonuclease IV)(Endodeoxyribonuclease IV)
- putative endonuclease 4
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4405901..4406791
- synteny block?: BlockID0031680
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1515
08BA02176:
C248_1600
11819-97:
MS7_1574 (nfo)
6850:
RSAU_001422 (nfo)
71193:
ST398NM01_1622
ECT-R 2:
ECTR2_1407
ED133:
SAOV_1557
ED98:
SAAV_1549 (nfo)
HO 5096 0412:
SAEMRSA15_14770
JH1:
SaurJH1_1649
JH9:
SaurJH9_1615
JKD6008:
SAA6008_01526 (nfo)
JKD6159:
SAA6159_01492 (nfo)
LGA251:
SARLGA251_14630
M013:
M013TW_1572
MRSA252:
SAR1634
MSHR1132:
SAMSHR1132_13970
MSSA476:
SAS1495
Mu3:
SAHV_1544
Mu50:
SAV1557
MW2:
MW1509
RF122:
SAB1429c
ST398:
SAPIG1622
T0131:
SAT0131_01651 (glmU)
TCH60:
HMPREF0772_11583 (nfo)
TW20:
SATW20_15530
USA300_TCH1516:
USA300HOU_1559 (nfo)
VC40:
SAVC_07035
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLLGSHVSMSGKKMLEGSAIEAHEYGETTFMIYTGAPQNTRRKSIEDLNITKGHEVMEKY
N315 MLLGSHVSMSGKKMLEGSAIEAYEYGETTFMIYTGAPQNTRRKSIEDLNITKGHEVMEKY
NCTC8325 MLLGSHVSMSGKKMLEGSAIEAHEYGETTFMIYTGAPQNTRRKSIEDLNITKGHEVMEKY
Newman MLLGSHVSMSGKKMLEGSAIEAHEYGETTFMIYTGAPQNTRRKSIEDLNITKGHEVMEKY
USA300_FPR3757 MLLGSHVSMSGKKMLEGSAIEAHEYGETTFMIYTGAPQNTRRKSIEDLNITKGHEVMEKY
**********************:*************************************
COL GLSNIVVHAPYIINIANTTKPETFNLGVDFLQQEIERTQAIGAKDIVLHPGAHVGAGVDA
N315 GLSNIVVHAPYIINIANTTKPETFNLGVDFLQQEIERTQAIGAKDIVLHPGAHVGAGVDA
NCTC8325 GLSNIVVHAPYIINIANTTKPETFNLGVDFLQQEIERTQAIGAKDIVLHPGAHVGAGVDA
Newman GLSNIVVHAPYIINIANTTKPETFNLGVDFLQQEIERTQAIGAKDIVLHPGAHVGAGVDA
USA300_FPR3757 GLSNIVVHAPYIINIANTTKPETFNLGVDFLQQEIERTQAIGAKDIVLHPGAHVGAGVDA
************************************************************
COL GINKIIEGLNEVLTNDNNVRIALETMAGKGTEIGRSFEELARIIDGVHNNERLSVCFDTC
N315 GINKIIEGLNEVLTNDNNVRIALETMAGKGTEIGRSFEELARIIDGVHNNERLSVCFDTC
NCTC8325 GINKIIEGLNEVLTNDNNVRIALETMAGKGTEIGRSFEELARIIDGVHNNERLSVCFDTC
Newman GINKIIEGLNEVLTNDNNVRIALETMAGKGTEIGRSFEELARIIDGVHNNERLSVCFDTC
USA300_FPR3757 GINKIIEGLNEVLTNDNNVRIALETMAGKGTEIGRSFEELARIIDGVHNNERLSVCFDTC
************************************************************
COL HTHDAGYNVKEDFDGVLNEFDKIIGVDRIKVVHVNDSKNDRGAQKDRHENIGFGYIGFDA
N315 HTHDAGYNVKEDFDGVLNEFDKIIGVDRIKVVHVNDSKNDRGAQKDRHENIGFGYIGFDA
NCTC8325 HTHDAGYNVKEDFDGVLNEFDKIIGVDRIKVVHVNDSKNDRGAQKDRHENIGFGYIGFDA
Newman HTHDAGYNVKEDFDGVLNEFDKIIGVDRIKVVHVNDSKNDRGAQKDRHENIGFGYIGFDA
USA300_FPR3757 HTHDAGYNVKEDFDGVLNEFDKIIGVDRIKVVHVNDSKNDRGAQKDRHENIGFGYIGFDA
************************************************************
COL LNYIVHHDSFKDIPKILETPYVGEDKKNKKPPYKLEIEMLKQQQFDPELKNKVMQQ
N315 LNYIVHHDSFKDIPKILETPYVGEDKKNKKPPYKLEIEMLKQQQFDPELKNKVMQQ
NCTC8325 LNYIVHHDSFKDIPKILETPYVGEDKKNKKPPYKLEIEMLKQQQFDPELKNKVMQQ
Newman LNYIVHHDSFKDIPKILETPYVGEDKKNKKPPYKLEIEMLKQQQFDPELKNKVMQQ
USA300_FPR3757 LNYIVHHDSFKDIPKILETPYVGEDKKNKKPPYKLEIEMLKQQQFDPELKNKVMQQ
********************************************************