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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004030000
- symbol?: xerD
- synonym:
- description?: tyrosine recombinase XerD
- tyrosine recombinase XerD
- integrase/recombinase XerD
- site-specific recombinase
- site-specific tyrosine recombinase XerD
- Site-specific recombinase XerD
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4319967..4320854
- synteny block?: BlockID0030670
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1454 (xerD)
08BA02176:
C248_1537 (xerD)
11819-97:
MS7_1514 (xerD)
6850:
RSAU_001365 (xerD)
71193:
ST398NM01_1563
ECT-R 2:
ECTR2_1348 (xerD)
ED133:
SAOV_1499 (xerD)
ED98:
SAAV_1487 (xerD)
HO 5096 0412:
SAEMRSA15_14190 (xerD)
JH1:
SaurJH1_1585
JH9:
SaurJH9_1554
JKD6008:
SAA6008_01467 (xerD)
JKD6159:
SAA6159_01426 (xerD)
LGA251:
SARLGA251_14050 (xerD)
M013:
M013TW_1511
MRSA252:
SAR1573 (xerD)
MSHR1132:
SAMSHR1132_13360
MSSA476:
SAS1437
Mu3:
SAHV_1485 (xerD)
Mu50:
SAV1497 (xerD)
MW2:
MW1451 (xerD)
RF122:
SAB1358c (xerD)
ST398:
SAPIG1563 (xerD)
T0131:
SAT0131_01590 (ndhF)
TCH60:
HMPREF0772_11644 (xerD)
TW20:
SATW20_14950 (xerD)
USA300_TCH1516:
USA300HOU_1498 (xerD)
VC40:
SAVC_06735
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL
N315 METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL
NCTC8325 METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL
Newman METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL
USA300_FPR3757 METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL
************************************************************
COL IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL
N315 IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL
NCTC8325 IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL
Newman IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL
USA300_FPR3757 IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL
************************************************************
COL ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG
N315 ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG
NCTC8325 ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG
Newman ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG
USA300_FPR3757 ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG
************************************************************
COL DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
N315 DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
NCTC8325 DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
Newman DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
USA300_FPR3757 DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
************************************************************
COL HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
N315 HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
NCTC8325 HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
Newman HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
USA300_FPR3757 HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
*******************************************************