PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003954000
• symbol^?: —
• synonym:
• description^?: DUF1672 domain-containing protein

  descriptions from strain specific annotations:

  • DUF1672 domain-containing protein
  • putative lipoprotein with DUF1672
  • lipoprotein
  • lipoprotein, putative
  • pseudogene
• strand^?: -
• coordinates^?: 4267250..4268964
• synteny block^?: BlockID0030000
• occurrence^?: in 88% of 34 strains

⊟Orthologs

COL:
SACOL1533
N315:
SA1317
NCTC8325:
SAOUHSC_01584
Newman:
NWMN_1398
USA300_FPR3757:
SAUSA300_1440
JSNZ:
JSNZ_001478
04-02981:
SA2981_1442
08BA02176:
C248_1530
11819-97:
MS7_1507
6850:
RSAU_001358
71193:
ST398NM01_1556
ECT-R 2:
ECTR2_1337
ED133:
—
ED98:
SAAV_1474
HO 5096 0412:
—
JH1:
SaurJH1_1573
JH9:
SaurJH9_1542
JKD6008:
SAA6008_01460
JKD6159:
SAA6159_01419
LGA251:
—
M013:
M013TW_1433
MRSA252:
SAR1565
MSHR1132:
—
MSSA476:
SAS1427
Mu3:
SAHV_1474
Mu50:
SAV1486
MW2:
MW1375
RF122:
SAB1351c
ST398:
SAPIG1556
T0131:
SAT0131_01583
TCH60:
HMPREF0772_11651
TW20:
SATW20_14880
USA300_TCH1516:
USA300HOU_1492
VC40:
SAVC_06700

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757
JSNZ

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             --------------------MENESKKD----TKTETKSVPEEMEASKYVGQGFQPPAEK
  N315            MLKKAKLILIAVLVLSGCSTIENESKKDRNTETNTETKSVPEEMEASKYVGQGFQPPAEK
  NCTC8325        --------------------MENESKKD----TKTETKSVPEEMEASKYVGQGFQPPAEK
  Newman          MKKFIGSVLATTLILGGCSTMENESKKD----TKTETKSVPEEMEASKYVGQGFQPPAEK
  USA300_FPR3757  --------------------MENESKKD----TKTETKSVPEEMEASKYVGQGFQPPAEK
                                      :*******    *:**************************
  
  COL             NAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPL
  N315            DAIEFAKKHKDKIAKRGEQFFMDNFGLKVKATNVVGSGDGVEVYVHCDDHDIVFNASIPF
  NCTC8325        NAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPL
  Newman          NAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPL
  USA300_FPR3757  NAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPL
                  :********:.:: * ***** **************..*********:**.******:*:
  
  COL             YKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFT
  N315            DKSIIDSDSSLRSEDKGDDMSTLVGTVLSGFEYRAHKEELDNLTEVLKEYKSKYKYTGYT
  NCTC8325        YKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFT
  Newman          YKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFT
  USA300_FPR3757  YKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFT
                   *. *....*:**:*:***** :************:**: *** :.:** :.**:***:*
  
  COL             KEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIRKNDKEFKEGMERARKEVNYAAN
  N315            ENAIMKTQNSGFRNEYYYLTAIPYTLDEYKRYFQPLIKEDDKSFRDGMRNSKKQLKDKSR
  NCTC8325        KEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIRKNDKEFKEGMERARKEVNYAAN
  Newman          KEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIRKNDKEFKEGMERARKEVNYAAN
  USA300_FPR3757  KEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIRKNDKEFKEGMERARKEVNYAAN
                  ::** **** *::***:*:*  . :*.**::*::***:::**.*::**..::*:::  :.
  
  COL             TDAVATLFSTKKNFTKDNTVDDVIELSDKLYNLKNKPDKSTITIQIGKPTINTKKAFYDD
  N315            PYVVTTLFSTKDNFTKDNTIDEMIDFSEVLKKKKNIPHDLNVSLQISNKYINTKRPNYSK
  NCTC8325        TDAVATLFSTKKNFTKDNTVDDVIELSDKLYNLKNKPDKSTITIQIGKPTINTKKAFYDD
  Newman          TDAVATLFSTKKNFTKDNTVDDVIELSDKLYNLKNKPDKSTITIQIGKPTINTKKAFYDD
  USA300_FPR3757  TDAVATLFSTKKNFTKDNTVDDVIELSDKLYNLKNKPDKSTITIQIGKPTINTKKAFYDD
                  . .*:******.*******:*::*::*: * : ** *.. .:::**.:  ****:. *..
  
  COL             NRPIEYGVHSKDE-----
  N315            KEVIEVGVFNHEKANTND
  NCTC8325        NRPIEYGVHSKDE-----
  Newman          NRPIEYGVHSKDE-----
  USA300_FPR3757  NRPIEYGVHSKDE-----
                  :. ** **..:::