Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN003926000
- symbol?: aroC
- synonym:
- description?: chorismate synthase
- chorismate synthase
- 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4247184..4248350
- synteny block?: BlockID0029720
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1422 (aroG)
08BA02176:
C248_1506 (aroC)
11819-97:
MS7_1422 (aroC)
6850:
RSAU_001338 (aroC)
71193:
ST398NM01_1466
ECT-R 2:
ECTR2_1320 (aroC)
ED133:
SAOV_1474 (aroC)
ED98:
SAAV_1453 (aroC)
HO 5096 0412:
SAEMRSA15_13270 (aroC)
JH1:
SaurJH1_1554
JH9:
SaurJH9_1525
JKD6008:
SAA6008_01435 (aroC)
JKD6159:
SAA6159_01331 (aroC)
LGA251:
SARLGA251_13800 (aroC)
M013:
M013TW_1414
MRSA252:
SAR1477 (aroC)
MSHR1132:
SAMSHR1132_13060
MSSA476:
SAS1409
Mu3:
SAHV_1454 (aroC)
Mu50:
SAV1466 (aroC)
MW2:
MW1356 (aroC)
RF122:
SAB1330c (aroC)
ST398:
SAPIG1466 (aroC)
T0131:
SAT0131_01555 (set3nm)
TCH60:
HMPREF0772_11738 (aroC)
TW20:
SATW20_14650 (aroC)
USA300_TCH1516:
USA300HOU_1404 (aroC)
VC40:
SAVC_06585
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRYLTSGESHGPQLTVIVEGVPANIEIKVEDINKEMFKRQGGYGRGRRMQIEKDTVEIVS
N315 MRYLTSGESHGPQLTVIVEGIPANLEIKVEDINKEMFKRQGGYGRGRRMQIEKDTVEIVS
NCTC8325 MRYLTSGESHGPQLTVIVEGVPANIEIKVEDINKEMFKRQGGYGRGRRMQIEKDTVEIVS
Newman MRYLTSGESHGPQLTVIVEGVPANIEIKVEDINKEMFKRQGGYGRGRRMQIEKDTVEIVS
USA300_FPR3757 MRYLTSGESHGPQLTVIVEGVPANIEIKVEDINKEMFKRQGGYGRGRRMQIEKDTVEIVS
********************:***:***********************************
COL GVRNGYTLGSPITMVVTNDDFTHWRKIMGAAPISEEERENMKRTITKPRPGHADLVGGMK
N315 GVRNGYTLGSPITMVVTNDDFTHWRKIMGAAPISEEERENMKRTITKPRPGHADLVGGMK
NCTC8325 GVRNGYTLGSPITMVVTNDDFTHWRKIMGAAPISEEERENMKRTITKPRPGHADLVGGMK
Newman GVRNGYTLGSPITMVVTNDDFTHWRKIMGAAPISEEERENMKRTITKPRPGHADLVGGMK
USA300_FPR3757 GVRNGYTLGSPITMVVTNDDFTHWRKIMGAAPISEEERENMKRTITKPRPGHADLVGGMK
************************************************************
COL YNHRDLRNVLERSSARETAARVAVGALCKVLLQQLDIDIYSRVVEIGGIKDKDFYDSETF
N315 YNHRDLRNVLERSSARETAARVAVGALCKVLLQQLDIDIYSRVVEIGGIKDKDFYDSETF
NCTC8325 YNHRDLRNVLERSSARETAARVAVGALCKVLLQQLDIDIYSRVVEIGGIKDKDFYDSETF
Newman YNHRDLRNVLERSSARETAARVAVGALCKVLLQQLDIDIYSRVVEIGGIKDKDFYDSETF
USA300_FPR3757 YNHRDLRNVLERSSARETAARVAVGALCKVLLQQLDIDIYSRVVEIGGIKDKDFYDSETF
************************************************************
COL KANLDRNDVRVIDDSIAQAMRDKIDEAKNEGDSIGGVVQVVVENMPVGVGSYVHYDRKLD
N315 KANLDRNDVRVIDDSIAQAMRDKIDEAKNEGDSIGGVVQVVVENMPVGVGSYVHYDRKLD
NCTC8325 KANLDRNDVRVIDDSIAQAMRDKIDEAKNEGDSIGGVVQVVVENMPVGVGSYVHYDRKLD
Newman KANLDRNDVRVIDDSIAQAMRDKIDEAKNEGDSIGGVVQVVVENMPVGVGSYVHYDRKLD
USA300_FPR3757 KANLDRNDVRVIDDSIAQAMRDKIDEAKNEGDSIGGVVQVVVENMPVGVGSYVHYDRKLD
************************************************************
COL GKIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEILYNSEIGYYRGSNHLGGLEGGMSN
N315 GKIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEILYNSEIGYYRGSNHLGGLEGGMSN
NCTC8325 GKIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEILYNSEIGYYRGSNHLGGLEGGMSN
Newman GKIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEILYNSEIGYYRGSNHLGGLEGGMSN
USA300_FPR3757 GKIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEILYNSEIGYYRGSNHLGGLEGGMSN
************************************************************
COL GMPIIVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCAVPAASIVCEHVVAFEIAK
N315 GMPIIVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCAVPAASIVCEHVVAFEIAK
NCTC8325 GMPIIVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCAVPAASIVCEHVVAFEIAK
Newman GMPIIVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCAVPAASIVCEHVVAFEIAK
USA300_FPR3757 GMPIIVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCAVPAASIVCEHVVAFEIAK
************************************************************
COL ALLEEFQSNHIEQLKQQIIERRQLNIEF
N315 ALLEEFQSNHIEQLQQQIADRRQLNVEF
NCTC8325 ALLEEFQSNHIEQLKQQIIERRQLNIEF
Newman ALLEEFQSNHIEQLKQQIIERRQLNIEF
USA300_FPR3757 ALLEEFQSNHIEQLKQQIIERRQLNIEF
**************:*** :*****:**