Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN003900000
- symbol?: —
- synonym:
- description?: RNA methyltransferase
- RNA methyltransferase
- class I SAM-dependent RNA methyltransferase
- N6-adenine-specific DNA methylase, putative
- site-specific DNA-methyltransferase (adenine-specific)
- Methyltransferase
- N6-adenine-specific DNA methylase
- protein YpsC
- putative N6-adenine-specific DNA methylase
- RNA methylase family protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4223079..4224224
- synteny block?: BlockID0029460
- occurrence?: in 100% of 33 strains
Suggest a pan gene symbol of "rlmK" and a description of "23S rRNA guanosine(2472)-N2-methyltransferase" to harmonize with PMID 38902339
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1399
08BA02176:
C248_1483
11819-97:
MS7_1400
6850:
RSAU_001317
71193:
ST398NM01_1443
ECT-R 2:
ECTR2_1298
ED133:
SAOV_1453
ED98:
SAAV_1428
HO 5096 0412:
SAEMRSA15_13060
JH1:
SaurJH1_1533
JH9:
SaurJH9_1504
JKD6008:
SAA6008_01412
JKD6159:
SAA6159_01309
LGA251:
SARLGA251_13590
M013:
M013TW_1391
MRSA252:
SAR1456
MSHR1132:
SAMSHR1132_12850
MSSA476:
SAS1387
Mu3:
SAHV_1432
Mu50:
SAV1444
MW2:
MW1333
RF122:
SAB1309c
ST398:
SAPIG1443
T0131:
SAT0131_01532
TCH60:
HMPREF0772_11760
TW20:
SATW20_14440
USA300_TCH1516:
USA300HOU_1381
VC40:
SAVC_06475
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MFQLLAVCPMGLEAVVAREIQELGYETNVENGRIFFEGDASAIVKANLWLRTADRIKIVV
N315 MFQLLAVCPMGLEAVVAREIQELGYETNVENGRIFFEGDASAIVKANLWLRTADRIKIVV
NCTC8325 MFQLLAVCPMGLEAVVAREIQELGYETNVENGRIFFEGDASAIVKANLWLRTADRIKIVV
Newman MFQLLAVCPMGLEAVVAREIQELGYETNVENGRIFFEGDASAIVKANLWLRTADRIKIVV
USA300_FPR3757 MFQLLAVCPMGLEAVVAREIQELGYETNVENGRIFFEGDASAIVKANLWLRTADRIKIVV
************************************************************
COL GRFNATTFDELFEQTKALPWESIIDKEGNFPVQGRSVKSTLHSVPDCQAITKKAIVERLR
N315 GRFNATTFDELFEQTKALPWESIIDKEGNFPVQGRSVKSTLHSVPDCQAITKKAIVERLR
NCTC8325 GRFNATTFDELFEQTKALPWESIIDKEGNFPVQGRSVKSTLHSVPDCQAITKKAIVERLR
Newman GRFNATTFDELFEQTKALPWESIIDKEGNFPVQGRSVKSTLHSVPDCQAITKKAIVERLR
USA300_FPR3757 GRFNATTFDELFEQTKALPWESIIDKEGNFPVQGRSVKSTLHSVPDCQAITKKAIVERLR
************************************************************
COL RAYNEKGWLNESGAKYPVEVAILKDNVLLTIDTSGSGLNRRGYRLAQGEAPIKETLAASL
N315 RAYNEKGWLNESGAKYPVEVAILKDNVLLTIDTSGSGLNRRGYRLAQGEAPIKETLAASL
NCTC8325 RAYNEKGWLNESGAKYPVEVAILKDNVLLTIDTSGSGLNRRGYRLAQGEAPIKETLAASL
Newman RAYNEKGWLNESGAKYPVEVAILKDNVLLTIDTSGSGLNRRGYRLAQGEAPIKETLAASL
USA300_FPR3757 RAYNEKGWLNESGAKYPVEVAILKDNVLLTIDTSGSGLNRRGYRLAQGEAPIKETLAASL
************************************************************
COL IRLANWKGDTPLIDPFCGSGTIAIEACLIAQNIAPGFNREFVSEQWNIMPANIYDDYRDE
N315 IRLANWKGDTPLIDPFCGSGTIAIEACLIAQNIAPGFNREFVSEQWNIMPANIYDDYRDE
NCTC8325 IRLANWKGDTPLIDPFCGSGTIAIEACLIAQNIAPGFNREFVSEQWNIMPANIYDDYRDE
Newman IRLANWKGDTPLIDPFCGSGTIAIEACLIAQNIAPGFNREFVSEQWNIMPANIYDDYRDE
USA300_FPR3757 IRLANWKGDTPLIDPFCGSGTIAIEACLIAQNIAPGFNREFVSEQWNIMPANIYDDYRDE
************************************************************
COL ADKMADYDKEIEVYASDIDPEMVEIAKRNAEEVGLSDIIKFSVKDVNTLTIDTEEPVALI
N315 ADKMADYDKEIEVYASDIDPEMVEIAKRNAEEVGLSDIIKFSVKDVNTLTIDTEEPVALI
NCTC8325 ADKMADYDKEIEVYASDIDPEMVEIAKRNAEEVGLSDIIKFSVKDVNTLTIDTEEPVALI
Newman ADKMADYDKEIEVYASDIDPEMVEIAKRNAEEVGLSDIIKFSVKDVNTLTIDTEEPVALI
USA300_FPR3757 ADKMADYDKEIEVYASDIDPEMVEIAKRNAEEVGLSDIIKFSVKDVNTLTIDTEEPVALI
************************************************************
COL GNPPYGERIGDREEVEEMYRYIGKLMKQHPFLSTYILTSNKEFEYLVDRKATKRRKLFNG
N315 GNPPYGERIGDREEVEEMYRYIGKLMKQHPFLSTYILTSNKEFEYLVNRKATKRRKLFNG
NCTC8325 GNPPYGERIGDREEVEEMYRYIGKLMKQHPFLSTYILTSNKEFEYLVDRKATKRRKLFNG
Newman GNPPYGERIGDREEVEEMYRYIGKLMKQHPFLSTYILTSNKEFEYLVDRKATKRRKLFNG
USA300_FPR3757 GNPPYGERIGDREEVEEMYRYIGKLMKQHPFLSTYILTSNKEFEYLVDRKATKRRKLFNG
***********************************************:************
COL YIECTYYQYWGKKTERKTIEN
N315 YIECTYYQYWGKKTERKTIEN
NCTC8325 YIECTYYQYWGKKTERKTIEN
Newman YIECTYYQYWGKKTERKTIEN
USA300_FPR3757 YIECTYYQYWGKKTERKTIEN
*********************