PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003815000
• symbol^?: msa
• synonym:
• description^?: protein msa

  descriptions from strain specific annotations:

  • protein msa
  • modulator of sarA Msa
  • Protein msa (Modulator of sarA)
  • modulator of SarA, Msa
• strand^?: -
• coordinates^?: 4106479..4106880
• synteny block^?: BlockID0028720
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1436
N315:
SA1233
NCTC8325:
SAOUHSC_01402
Newman:
NWMN_1312
USA300_FPR3757:
SAUSA300_1294
04-02981:
SA2981_1355
08BA02176:
C248_1441 (msa)
11819-97:
MS7_1357
6850:
RSAU_001281 (msa)
71193:
ST398NM01_1403
ECT-R 2:
ECTR2_1258
ED133:
SAOV_1411c
ED98:
SAAV_1384
HO 5096 0412:
SAEMRSA15_12640
JH1:
SaurJH1_1491
JH9:
SaurJH9_1462
JKD6008:
SAA6008_01365 (msa)
JKD6159:
SAA6159_01268 (msa)
LGA251:
SARLGA251_13180 (msa)
M013:
M013TW_1346
MRSA252:
SAR1413
MSHR1132:
SAMSHR1132_12420
MSSA476:
SAS1342
Mu3:
SAHV_1389
Mu50:
SAV1401
MW2:
MW1289
RF122:
SAB1257c
ST398:
SAPIG1403
T0131:
SAT0131_01476
TCH60:
HMPREF0772_11808
TW20:
SATW20_14000 (msa)
USA300_TCH1516:
USA300HOU_1336
VC40:
SAVC_06250

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKYLILSLVANLLVFGVLSAIGLNINILAAMMIVLVIPIMISGILFFKTNIDKTYIFFNI
  N315            MKYLILSLVANLLVFGVLSAIGLNINILAAMMIVLVIPIMISGILFFKTNIDKTYIFFNI
  NCTC8325        MKYLILSLVANLLVFGVLSAIGLNINILAAMMIVLVIPIMISGILFFKTNIDKTYIFFNI
  Newman          MKYLILSLVANLLVFGVLSAIGLNINILAAMMIVLVIPIMISGILFFKTNIDKTYIFFNI
  USA300_FPR3757  MKYLILSLVANLLVFGVLSAIGLNINILAAMMIVLVIPIMISGILFFKTNIDKTYIFFNI
                  ************************************************************
  
  COL             IFIDFYYYIYNVHLMTLPKFNNYIKAEMMELEDIDVLITSKDFGFDEILFYTLYLLLILI
  N315            IFIDFYYYIYNVHLMTLPKFNNYIKAEMMELEDIDVLITSKDFGFDEILFYTLYLLLILI
  NCTC8325        IFIDFYYYIYNVHLMTLPKFNNYIKAEMMELEDIDVLITSKDFGFDEILFYTLYLLLILI
  Newman          IFIDFYYYIYNVHLMTLPKFNNYIKAEMMELEDIDVLITSKDFGFDEILFYTLYLLLILI
  USA300_FPR3757  IFIDFYYYIYNVHLMTLPKFNNYIKAEMMELEDIDVLITSKDFGFDEILFYTLYLLLILI
                  ************************************************************
  
  COL             VLYYLKKQVKHKI
  N315            VLYYLKKQVKHKI
  NCTC8325        VLYYLKKQVKHKI
  Newman          VLYYLKKQVKHKI
  USA300_FPR3757  VLYYLKKQVKHKI
                  *************