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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003767000
- symbol?: trpB
- synonym:
- description?: tryptophan synthase subunit beta
- tryptophan synthase subunit beta
- tryptophan synthase, beta subunit
- Tryptophan synthase beta chain
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4064183..4065398
- synteny block?: BlockID0028290
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1326 (trpB)
08BA02176:
C248_1410 (trpB)
11819-97:
MS7_1329 (trpB)
6850:
RSAU_001253 (trpB)
71193:
ST398NM01_1373
ECT-R 2:
ECTR2_1229 (trpB)
ED133:
SAOV_1382
ED98:
SAAV_1354 (trpB)
HO 5096 0412:
SAEMRSA15_12200 (trpB)
JH1:
SaurJH1_1462
JH9:
SaurJH9_1433
JKD6008:
SAA6008_01337 (trpB)
JKD6159:
SAA6159_01238 (trpB)
LGA251:
SARLGA251_12810 (trpB)
M013:
M013TW_1318
MRSA252:
SAR1385 (trpB)
MSHR1132:
SAMSHR1132_12150
MSSA476:
SAS1312
Mu3:
SAHV_1360 (trpB)
Mu50:
SAV1372 (trpB)
MW2:
MW1259 (trpB)
RF122:
SAB1227 (trpB)
ST398:
SAPIG1373 (trpB)
T0131:
SAT0131_01444 (hlgA)
TCH60:
HMPREF0772_11835 (trpB)
TW20:
SATW20_13720 (trpB)
USA300_TCH1516:
USA300HOU_1307 (trpB)
VC40:
SAVC_06110
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNKQIQTEADELGFFGEYGGQYVPETLMPAIIELKKAYKEAKADPEFQRELEYYLSEYVG
N315 MNKQIQTEADELGFFGEYGGQYVPETLMPAIIELKKAYKEAKADPEFQRELEYYLSEYVG
NCTC8325 MNKQIQTEADELGFFGEYGGQYVPETLMPAIIELKKAYKEAKADPEFQRELEYYLSEYVG
Newman MNKQIQTEADELGFFGEYGGQYVPETLMPAIIELKKAYKEAKADPEFQRELEYYLSEYVG
USA300_FPR3757 MNKQIQTEADELGFFGEYGGQYVPETLMPAIIELKKAYKEAKADPEFQRELEYYLSEYVG
************************************************************
COL RATPLTYAASYTESLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKKLVAETGAG
N315 RATPLTYAASYTESLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKKLVAETGAG
NCTC8325 RATPLTYAASYTESLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKKLVAETGAG
Newman RATPLTYAASYTESLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKKLVAETGAG
USA300_FPR3757 RATPLTYAASYTESLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKKLVAETGAG
************************************************************
COL QHGVASATVAALFDMELVVFMGSEDIKRQQLNVFRMELLGAKVVAVEDGQGTLSDAVNKA
N315 QHGVASATVAALFDMELVVFMGSEDIKRQQLNVFRMELLGAKVVAVEEGQGTLSDAVNKA
NCTC8325 QHGVASATVAALFDMELVVFMGSEDIKRQQLNVFRMELLGAKVVAVEDGQGTLSDAVNKA
Newman QHGVASATVAALFDMELVVFMGSEDIKRQQLNVFRMELLGAKVVAVEDGQGTLSDAVNKA
USA300_FPR3757 QHGVASATVAALFDMELVVFMGSEDIKRQQLNVFRMELLGAKVVAVEDGQGTLSDAVNKA
***********************************************:************
COL LQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGG
N315 LQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGG
NCTC8325 LQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGG
Newman LQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGG
USA300_FPR3757 LQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGG
************************************************************
COL GSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQV
N315 GSNAIGTFYPFIKDDVALYGVEAAGQGEDTDKHALAIGKGSPGVLHGTKMYLIQDEGGQV
NCTC8325 GSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQV
Newman GSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQV
USA300_FPR3757 GSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQV
***************************:****************************.***
COL QLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHA
N315 QLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHA
NCTC8325 QLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHA
Newman QLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHA
USA300_FPR3757 QLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHA
************************************************************
COL LSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQYMVERGLAND
N315 LSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQYMAERGLAND
NCTC8325 LSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQYMVERGLAND
Newman LSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQYMVERGLAND
USA300_FPR3757 LSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQYMVERGLAND
************************************.*******