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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003721000
- symbol?: sbcD
- synonym:
- description?: exonuclease sbcCD subunit D
- exonuclease sbcCD subunit D
- exonuclease SbcD
- nuclease SbcCD subunit D
- DNA repair exonuclease
- putative exonuclease
- SbcD protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4021449..4022591
- synteny block?: BlockID0027870
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1300 (sbcD)
08BA02176:
C248_1381
11819-97:
MS7_1304 (sbcD)
6850:
RSAU_001227
71193:
ST398NM01_1347
ECT-R 2:
ECTR2_1204 (sbcD)
ED133:
SAOV_1358
ED98:
SAAV_1326 (sbcD)
HO 5096 0412:
SAEMRSA15_11920
JH1:
SaurJH1_1434
JH9:
SaurJH9_1407
JKD6008:
SAA6008_01311 (sbcD)
JKD6159:
SAA6159_01212 (sbcD)
LGA251:
SARLGA251_12540
M013:
M013TW_1293
MRSA252:
SAR1356
MSHR1132:
SAMSHR1132_11900
MSSA476:
SAS1285
Mu3:
SAHV_1334
Mu50:
SAV1345
MW2:
MW1232
RF122:
SAB1203
ST398:
SAPIG1347
T0131:
SAT0131_01416 (nirB)
TCH60:
HMPREF0772_11863 (sbcD)
TW20:
SATW20_13470
USA300_TCH1516:
—
VC40:
SAVC_05965
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI
N315 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI
NCTC8325 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI
Newman MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI
USA300_FPR3757 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI
************************************************************
COL MLLEQAIGKLNLELRIPIIIISGNHDGKERLNYGASWFEHNQLFIRTDFTSINSPIEING
N315 MLLEQAIGKLNLELRIPIIMISGNHDGKERLNYGASWFEHNQLFIRTDFTSINSPIEING
NCTC8325 MLLEQAIGKLNLELRIPIIIISGNHDGKERLNYGASWFEHNQLFIRTDFTSINSPIEING
Newman MLLEQAIGKLNLELRIPIIIISGNHDGKERLNYGASWFEHNQLFIRTDFTSINSPIEING
USA300_FPR3757 MLLEQAIGKLNLELRIPIIIISGNHDGKERLNYGASWFEHNQLFIRTDFTSINSPIEING
*******************:****************************************
COL VNFYTLPYATVSEMKHYFEDDTIETHQQGITRCIETIAPEIDEDAVNILISHLTVQGGKT
N315 VNFYTLPYATVSEMKHYFEDDTIETHQQGITRCIETIAPEIDEDAVNILISHLTVQGGKT
NCTC8325 VNFYTLPYATVSEMKHYFEDDTIETHQQGITRCIETIAPEIDEDAVNILISHLTVQGGKT
Newman VNFYTLPYATVSEMKHYFEDDTIETHQQGITRCIETIAPEIDEDAVNILISHLTVQGGKT
USA300_FPR3757 VNFYTLPYATVSEMKHYFEDDTIETHQQGITRCIETIAPEIDEDAVNILISHLTVQGGKT
************************************************************
COL SDSERPLTIGTVESVQKGVFDIFDYVMLGHLHHPFSIEDDKIKYSGSLLQYSFSEAGQAK
N315 SDSERPLTIGTVESVQKGVFDIFDYVMLGHLHHPFSIEDDKIKYSGSLLQYSFSEAGQAK
NCTC8325 SDSERPLTIGTVESVQKGVFDIFDYVMLGHLHHPFSIEDDKIKYSGSLLQYSFSEAGQAK
Newman SDSERPLTIGTVESVQKGVFDIFDYVMLGHLHHPFSIEDDKIKYSGSLLQYSFSEAGQAK
USA300_FPR3757 SDSERPLTIGTVESVQKGVFDIFDYVMLGHLHHPFSIEDDKIKYSGSLLQYSFSEAGQAK
************************************************************
COL GYRRVTINDGIINDVFIPLKPLRQLEIISGEYNDVINEKVHVKNKDNYLHFKLKNMSHIT
N315 GYRRLTINDGIINDVFIPLKPLRQLEIISGEYNDVINEKVHVKNKDNYLHFKLKNMSHIT
NCTC8325 GYRRVTINDGIINDVFIPLKPLRQLEIISGEYNDVINEKVHVKNKDNYLHFKLKNMSHIT
Newman GYRRVTINDGIINDVFIPLKPLRQLEIISGEYNDVINEKVHVKNKDNYLHFKLKNMSHIT
USA300_FPR3757 GYRRVTINDGIINDVFIPLKPLRQLEIISGEYNDVINEKVHVKNKDNYLHFKLKNMSHIT
****:*******************************************************
COL DPMMSLKQIYPNTLALTNETFNYNEENNAIEISEKDDMSIIEMFYKHITDKELSDIQSKK
N315 DPMMSLKQIYPNTLALTNETFNYNEENNAIEISEKDDMSIIEMFYKHITDKELSDIQSKK
NCTC8325 DPMMSLKQIYPNTLALTNETFNYNEENNAIEISEKDDMSIIEMFYKHITDKELSDIQSKK
Newman DPMMSLKQIYPNTLALTNETFNYNEENNAIEISEKDDMSIIEMFYKHITDKELSDIQSKK
USA300_FPR3757 DPMMSLKQIYPNTLALTNETFNYNEENNAIEISEKDDMSIIEMFYKHITDKELSDIQSKK
************************************************************
COL IKNILENELRKED
N315 IKNILENELRKED
NCTC8325 IKNILENELRKED
Newman IKNILENELRKED
USA300_FPR3757 IKNILENELRKED
*************