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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003568000
- symbol?: rnpM
- synonym:
- description?: DNA-binding protein
- DNA-binding protein
- putative YlxR-domain protein
- YlxR family protein
- nucleic-acid-binding protein implicated in transcription termination
- putative nucleic-acid-binding protein implicated in transcription termination
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3906029..3906313
- synteny block?: BlockID0026450
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1225
08BA02176:
C248_1300
11819-97:
MS7_1225
6850:
RSAU_001150
71193:
ST398NM01_1269
ECT-R 2:
ECTR2_1123
ED133:
SAOV_1269
ED98:
SAAV_1242
HO 5096 0412:
SAEMRSA15_11000
JH1:
SaurJH1_1353
JH9:
SaurJH9_1327
JKD6008:
SAA6008_01222
JKD6159:
SAA6159_01122
LGA251:
SARLGA251_11780
M013:
M013TW_1207
MRSA252:
SAR1243
MSHR1132:
SAMSHR1132_11100
MSSA476:
SAS1201
Mu3:
SAHV_1257
Mu50:
SAV1267
MW2:
MW1150
RF122:
SAB1129
ST398:
SAPIG1269
T0131:
SAT0131_01320
TCH60:
HMPREF0772_11962
TW20:
SATW20_12610
USA300_TCH1516:
USA300HOU_1199
VC40:
SAVC_05500
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKKKKIPMRKCILSNEMHPKKDMIRVVVNKEGEIFADVTGKKQGRGAYVSKDVAMVEKAQ
N315 MKKKKIPMRKCILSNEMHPKKDMIRVVVNKEGEIFADVTGKKQGRGAYVSKDVAMVEKAQ
NCTC8325 MKKKKIPMRKCILSNEMHPKKDMIRVVVNKEGEIFADVTGKKQGRGAYVSKDVAMVEKAQ
USA300_FPR3757 MKKKKIPMRKCILSNEMHPKKDMIRVVVNKEGEIFADVTGKKQGRGAYVSKDVAMVEKAQ
************************************************************
COL QKEILEKYFKASKEQLDPVYKEIIRLIYREEIPK
N315 QKEILEKYFKASKEQLDPVYKEIIRLIYREEIPK
NCTC8325 QKEILEKYFKASKEQLDPVYKEIIRLIYREEIPK
USA300_FPR3757 QKEILEKYFKASKEQLDPVYKEIIRLIYREEIPK
**********************************