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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003567000
- symbol?: nusA
- synonym:
- description?: transcription elongation factor NusA
- transcription elongation factor NusA
- transcription termination/antitermination protein NusA
- Transcription termination protein NusA
- NusA antitermination factor
- N utilization substance protein A, putative
- putative N utilization substance protein A
- transcription elongation protein nusA
- transcription termination-antitermination factor
- transcription termination factor NusA
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3904833..3906008
- synteny block?: BlockID0026440
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1224 (nusA)
08BA02176:
C248_1299 (nusA)
11819-97:
MS7_1224 (nusA)
6850:
RSAU_001148
71193:
ST398NM01_1268
ECT-R 2:
ECTR2_1122 (nusA)
ED133:
SAOV_1268
ED98:
SAAV_1241 (nusA)
HO 5096 0412:
SAEMRSA15_10990 (nusA)
JH1:
SaurJH1_1352 (nusA)
JH9:
SaurJH9_1326 (nusA)
JKD6008:
SAA6008_01221 (nusA)
JKD6159:
SAA6159_01121 (nusA)
LGA251:
SARLGA251_11770 (nusA)
M013:
M013TW_1206
MRSA252:
SAR1242 (nusA)
MSHR1132:
SAMSHR1132_11090
MSSA476:
SAS1200 (nusA)
Mu3:
SAHV_1256 (nusA)
Mu50:
SAV1266 (nusA)
MW2:
MW1149 (nusA)
RF122:
SAB1128 (nusA)
ST398:
SAPIG1268 (nusA)
T0131:
SAT0131_01319
TCH60:
HMPREF0772_11963 (nusA)
TW20:
SATW20_12600 (nusA)
USA300_TCH1516:
USA300HOU_1198 (nusA)
VC40:
SAVC_05495 (nusA)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSSNELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVI
N315 MSSNELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVI
NCTC8325 MSSNELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVI
Newman MSSNELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVI
USA300_FPR3757 MSSNELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVI
************************************************************
COL ARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLR
N315 ARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLR
NCTC8325 ARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLR
Newman ARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLR
USA300_FPR3757 ARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLR
************************************************************
COL DAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIK
N315 DAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIK
NCTC8325 DAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIK
Newman DAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIK
USA300_FPR3757 DAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIK
************************************************************
COL VYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFS
N315 VYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFS
NCTC8325 VYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFS
Newman VYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFS
USA300_FPR3757 VYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFS
************************************************************
COL ENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDE
N315 ENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDE
NCTC8325 ENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDE
Newman ENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDE
USA300_FPR3757 ENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDE
************************************************************
COL TNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTE
N315 TNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTE
NCTC8325 TNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTE
Newman TNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTE
USA300_FPR3757 TNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTE
************************************************************
COL EDVALEDADTTESTEEVNDVSVETNVEKESE
N315 EDIALEDADTTESTEEVNDVSVETNVEKESE
NCTC8325 EDVALEDADTTESTEEVNDVSVETNVEKESE
Newman EDVALEDADTTESTEEVNDVSVETNVEKESE
USA300_FPR3757 EDVALEDADTTESTEEVNDVSVETNVEKESE
**:****************************